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src/mappings/omim.sssom.tsv: mappings to MIMs that don't exist #732

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twhetzel opened this issue Dec 19, 2024 · 1 comment
Open

src/mappings/omim.sssom.tsv: mappings to MIMs that don't exist #732

twhetzel opened this issue Dec 19, 2024 · 1 comment
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bug Something isn't working data quality

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@twhetzel
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A general placeholder for now. This ticket refers to this PR thread, which will be used to fill out the issue here.
@joeflack4 joeflack4 mentioned this issue Dec 19, 2024
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@joeflack4 joeflack4 changed the title The src/mappings/omim.sssom.tsv file contains mappings to OMIM terms that do not exist src/mappings/omim.sssom.tsv contains mappings to OMIM terms that do not exist Dec 19, 2024
@joeflack4 joeflack4 changed the title src/mappings/omim.sssom.tsv contains mappings to OMIM terms that do not exist src/mappings/omim.sssom.tsv has mappings to MIMs that don't exist Dec 19, 2024
@joeflack4 joeflack4 changed the title src/mappings/omim.sssom.tsv has mappings to MIMs that don't exist src/mappings/omim.sssom.tsv: mappings to MIMs that don't exist Dec 19, 2024
@joeflack4 joeflack4 added bug Something isn't working data quality labels Dec 19, 2024
@joeflack4
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The direct source of these mappings is coming from the mondo repo rather than omim: mondo_exactmatch_omim.sssom.tsv

Proposal:
I think we need a mechanism in omim that identifies deleted or moved MIMs and corrects these mappings.

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@twhetzel @joeflack4