Merge pull request #417 from monarch-initiative/next-release

Update release files
monarch-initiative · Feb 1, 2024 · fb8bfb0 · fb8bfb0
2 parents e99032c + 1b30221
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-07/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/doid.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 25 |
-| Axioms | 113059 |
-| Logical axioms | 15835 |
-| Classes | 12928 |
+| Axioms | 113780 |
+| Logical axioms | 15964 |
+| Classes | 12996 |
 | Object properties | 2 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,10 +32,10 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 84271 |
+| AnnotationAssertion | 84795 |
 | DisjointClasses | 26 |
-| Declaration | 12953 |
-| SubClassOf | 15809 |
+| Declaration | 13021 |
+| SubClassOf | 15938 |
 
 
 #### Entity namespaces: axiom counts by namespace
@@ -44,15 +44,15 @@
 | ------ | ----- |
 | oboInOwl | 11 |
 | owl | 2 |
-| DOID | 11388 |
-| HP | 115 |
+| DOID | 11456 |
+| HP | 117 |
 | xsd | 1 |
 | CL | 61 |
 | skos | 5 |
 | BFO | 2 |
 | rdfs | 2 |
 | FOODON | 24 |
-| NCBITaxon | 320 |
+| NCBITaxon | 319 |
 | TRANS | 13 |
 | SYMP | 306 |
 | dc11 | 2 |
@@ -61,7 +61,7 @@
 | IAO | 2 |
 | UBERON | 393 |
 | SO | 17 |
-| obo | 191 |
+| obo | 190 |
 | GENO | 10 |
 | dc | 1 |
 
@@ -70,7 +70,7 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 44758 |
+| Class | 45084 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/gard.md b/docs/metrics/gard.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/gard.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/gard.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/omim.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 13 |
-| Axioms | 348742 |
-| Logical axioms | 36188 |
-| Classes | 31563 |
+| Axioms | 349945 |
+| Logical axioms | 36367 |
+| Classes | 31683 |
 | Object properties | 6 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,22 +32,22 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 280976 |
-| Declaration | 31578 |
-| SubClassOf | 36188 |
+| AnnotationAssertion | 281880 |
+| Declaration | 31698 |
+| SubClassOf | 36367 |
 
 
 #### Entity namespaces: axiom counts by namespace
 
 | Metric | Value |
 | ------ | ----- |
-| prefix_unknown | 30117 |
+| prefix_unknown | 30236 |
 | oboInOwl | 3 |
 | owl | 2 |
 | xsd | 1 |
 | skos | 1 |
 | rdfs | 2 |
-| CHR | 1445 |
+| CHR | 1446 |
 | MONDO | 1 |
 | rdf | 1 |
 | IAO | 2 |
@@ -60,8 +60,8 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 103933 |
-| ObjectSomeValuesFrom | 14240 |
+| Class | 104411 |
+| ObjectSomeValuesFrom | 14302 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,16 +2,16 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-11-08/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-01-31/ordo.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 8 |
-| Axioms | 144682 |
-| Logical axioms | 42458 |
-| Classes | 14994 |
+| Axioms | 155842 |
+| Logical axioms | 42481 |
+| Classes | 14917 |
 | Object properties | 3 |
 | Data properties | 0 |
 | Individuals | 0 |
@@ -32,16 +32,16 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 87221 |
-| Declaration | 15003 |
-| SubClassOf | 42458 |
+| AnnotationAssertion | 98435 |
+| Declaration | 14926 |
+| SubClassOf | 42481 |
 
 
 #### Entity namespaces: axiom counts by namespace
 
 | Metric | Value |
 | ------ | ----- |
-| prefix_unknown | 14994 |
+| prefix_unknown | 14917 |
 | oboInOwl | 5 |
 | owl | 1 |
 | rdf | 1 |
@@ -55,8 +55,8 @@
 
 | Metric | Value |
 | ------ | ----- |
-| Class | 99910 |
-| ObjectSomeValuesFrom | 6688 |
+| Class | 99879 |
+| ObjectSomeValuesFrom | 6737 |
 
 
 More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -5,9 +5,9 @@
 | [DOID](./mapped_deprecated_doid.md)         |                         3 |
 | [ORDO](./mapped_deprecated_ordo.md)         |                       225 |
 | [NCIT](./mapped_deprecated_ncit.md)         |                        12 |
+| [GARD](./mapped_deprecated_gard.md)         |                         0 |
 | [ICD10CM](./mapped_deprecated_icd10cm.md)   |                         0 |
 | [ICD10WHO](./mapped_deprecated_icd10who.md) |                         0 |
-| [GARD](./mapped_deprecated_gard.md)         |                         0 |
 
 `Ontology`: Name of ontology    
 `Tot deprecated in Mondo`: Total terms that the ontology source itself has deprecated which have existing xrefs in Mondo

diff --git a/docs/reports/migrate.md b/docs/reports/migrate.md
@@ -1,12 +1,12 @@
 # Migratable terms
 | Ontology                          | Tot   |
 |:----------------------------------|:------|
+| [ORDO](./migrate_ordo.md)         | 97    |
 | [GARD](./migrate_gard.md)         | 9,370 |
-| [OMIM](./migrate_omim.md)         | 67    |
-| [ORDO](./migrate_ordo.md)         | 3     |
-| [NCIT](./migrate_ncit.md)         | 2,180 |
+| [NCIT](./migrate_ncit.md)         | 2,179 |
+| [DOID](./migrate_doid.md)         | 155   |
 | [ICD10WHO](./migrate_icd10who.md) | 119   |
-| [DOID](./migrate_doid.md)         | 115   |
+| [OMIM](./migrate_omim.md)         | 107   |
 | [ICD10CM](./migrate_icd10cm.md)   | 1,889 |
 
 ### Codebook