14 June release

monarch-initiative · Jun 15, 2023 · a1e5635 · a1e5635
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/doid.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/gard.md b/docs/metrics/gard.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/gard.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/gard.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/omim.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-11/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-15/ordo.owl
 
 ### Entities and axioms
 

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -4,7 +4,7 @@
 | [OMIM](./mapped_deprecated_omim.md)         |                        40 |
 | [DOID](./mapped_deprecated_doid.md)         |                         4 |
 | [NCIT](./mapped_deprecated_ncit.md)         |                         3 |
-| [ORDO](./mapped_deprecated_ordo.md)         |                       115 |
+| [ORDO](./mapped_deprecated_ordo.md)         |                       113 |
 | [ICD10WHO](./mapped_deprecated_icd10who.md) |                         0 |
 | [ICD10CM](./mapped_deprecated_icd10cm.md)   |                         0 |
 | [GARD](./mapped_deprecated_gard.md)         |                         0 |

diff --git a/docs/reports/mapped_deprecated_ordo.md b/docs/reports/mapped_deprecated_ordo.md
@@ -7,7 +7,6 @@
 | ID            | A oboInOwl:hasDbXref | >A oboInOwl:source       |
 | MONDO:0001807 | Orphanet:79211       | MONDO:equivalentObsolete |
 | MONDO:0009317 | Orphanet:1245        | MONDO:equivalentObsolete |
-| MONDO:0009968 | Orphanet:93611       | MONDO:equivalentObsolete |
 | MONDO:0010045 | Orphanet:2823        | MONDO:equivalentObsolete |
 | MONDO:0010994 | Orphanet:2641        | MONDO:equivalentObsolete |
 | MONDO:0011910 | Orphanet:265         | MONDO:equivalentObsolete |
@@ -114,7 +113,6 @@
 | MONDO:0020282 | Orphanet:98714       | MONDO:equivalentObsolete |
 | MONDO:0020742 | Orphanet:1317        | MONDO:equivalentObsolete |
 | MONDO:0020871 | Orphanet:623         | MONDO:equivalentObsolete |
-| MONDO:0021013 | Orphanet:75790       | MONDO:equivalentObsolete |
 | MONDO:0021062 | Orphanet:306539      | MONDO:equivalentObsolete |
 | MONDO:0022921 | Orphanet:2861        | MONDO:equivalentObsolete |
 | MONDO:0023072 | Orphanet:1939        | MONDO:equivalentObsolete |

diff --git a/docs/reports/unmapped.md b/docs/reports/unmapped.md
@@ -5,7 +5,7 @@
 | [ICD10CM](./unmapped_icd10cm.md)   | 95,847      | 15,452         | 0                | 0                         | 80,395                                    | 1,161                     | 79,234                      | 98.6%                     |
 | [NCIT](./unmapped_ncit.md)         | 174,300     | 154,519        | 5,055            | 5,052                     | 14,726                                    | 3,681                     | 11,045                      | 75.0%                     |
 | [GARD](./unmapped_gard.md)         | 12,004      | 0              | 0                | 0                         | 12,004                                    | 0                         | 12,004                      | 100.0%                    |
-| [ORDO](./unmapped_ordo.md)         | 10,866      | 1,720          | 1,418            | 1,303                     | 9,146                                     | 9,029                     | 117                         | 1.3%                      |
+| [ORDO](./unmapped_ordo.md)         | 10,866      | 1,720          | 1,418            | 1,305                     | 9,146                                     | 9,029                     | 117                         | 1.3%                      |
 | [DOID](./unmapped_doid.md)         | 13,791      | 2,643          | 2,477            | 2,473                     | 11,147                                    | 11,018                    | 129                         | 1.2%                      |
 | [OMIM](./unmapped_omim.md)         | 28,750      | 18,962         | 1,353            | 1,313                     | 8,435                                     | 8,434                     | 1                           | 0.0%                      |
 

diff --git a/src/mappings/icd10cm.sssom.tsv b/src/mappings/icd10cm.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/131ab5b4-43c6-4cf7-8685-1deb70eea251
+# mapping_set_id: https://w3id.org/sssom/mappings/8ee0b407-3c62-41a0-96bb-1d4a2c7e2865
 
 
diff --git a/src/mappings/icd10who.sssom.tsv b/src/mappings/icd10who.sssom.tsv
@@ -6,6 +6,6 @@
 #   skos: http://www.w3.org/2004/02/skos/core#
 #   sssom: https://w3id.org/sssom/
 # license: https://w3id.org/sssom/license/unspecified
-# mapping_set_id: https://w3id.org/sssom/mappings/d3fff3ac-5d8a-4539-b279-a75001bad2da
+# mapping_set_id: https://w3id.org/sssom/mappings/bda75f63-fa13-48bd-9031-60e53c68d37d