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# MedGen ingest | ||
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## Prerequisites | ||
On macOS, (2) and (3) should be available without the need for installation. | ||
1. Python 3.9+ | ||
2. `make` | ||
3. Perl | ||
4. Docker | ||
5. Docker images | ||
One or both of the following, depending on if you want to run the stable build `latest` or `dev`: | ||
- a. `docker pull obolibrary/odkfull:latest` | ||
- b. `docker pull obolibrary/odkfull:dev` | ||
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## Setup | ||
1. Give permission to run Perl: `chmod +x ./bin/*.pl` | ||
2. Install Python dependencies: `pip install -r requirements.txt` | ||
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## Running | ||
`sh run.sh make all` | ||
# MedGen ingest | ||
|
||
## Prerequisites | ||
On macOS, Perl should be available without the need for installation. | ||
Python and Perl are also dev dependencies. They're not needed to run the docker containers, but they are needed for | ||
local development situations / debugging. | ||
1. Python 3.9+ | ||
2. Perl | ||
3. Docker | ||
4. Docker images | ||
One or both of the following, depending on if you want to run the stable build `latest` or `dev`: | ||
- a. `docker pull obolibrary/odkfull:latest` | ||
- b. `docker pull obolibrary/odkfull:dev` | ||
|
||
## Setup | ||
1. Give permission to run Perl: `chmod +x ./bin/*.pl` | ||
2. Install Python dependencies: `pip install -r requirements.txt` | ||
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||
## Running | ||
`sh run.sh make all` |