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joeflack4 committed Mar 2, 2024
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# MedGen ingest

## Prerequisites
On macOS, (2) and (3) should be available without the need for installation.
1. Python 3.9+
2. `make`
3. Perl
4. Docker
5. Docker images
One or both of the following, depending on if you want to run the stable build `latest` or `dev`:
- a. `docker pull obolibrary/odkfull:latest`
- b. `docker pull obolibrary/odkfull:dev`

## Setup
1. Give permission to run Perl: `chmod +x ./bin/*.pl`
2. Install Python dependencies: `pip install -r requirements.txt`

## Running
`sh run.sh make all`
# MedGen ingest

## Prerequisites
On macOS, Perl should be available without the need for installation.
Python and Perl are also dev dependencies. They're not needed to run the docker containers, but they are needed for
local development situations / debugging.
1. Python 3.9+
2. Perl
3. Docker
4. Docker images
One or both of the following, depending on if you want to run the stable build `latest` or `dev`:
- a. `docker pull obolibrary/odkfull:latest`
- b. `docker pull obolibrary/odkfull:dev`

## Setup
1. Give permission to run Perl: `chmod +x ./bin/*.pl`
2. Install Python dependencies: `pip install -r requirements.txt`

## Running
`sh run.sh make all`

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