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lnrekerle committed Oct 10, 2023
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Expand Up @@ -51,7 +51,7 @@ We can then view the data using the list commands.
[('NP_09876.5', 26)]
>>> tx_dict = cohort.list_data_by_tx('NM_1234.5')
>>> sorted(tx_dict['NM_1234.5'].items())
[('frameshift_variant', 1), ('missense_variant', 1)]
[('FRAMESHIFT_VARIANT', 1), ('MISSENSE_VARIANT', 1)]

Using the counts, we can choose and run what analyses we want.
For instance, we can partition the patients into two groups based on presence/absence of a *frameshift* variant:
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