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Left align report tables by default.
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@ielis
ielis committed Dec 12, 2024
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338 changes: 167 additions & 171 deletions docs/report/tbx5_all_variants.html
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78 changes: 37 additions & 41 deletions docs/report/tbx5_cohort_info.html
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Expand Up @@ -108,7 +108,7 @@

table td,
tr {
text-align: right;
text-align: left;
padding: 0px 5px;
}

Expand All @@ -120,10 +120,6 @@
background-color: var(--gpsea-color-surface-a20);
}

.lft {
text-align: left;
}

caption {
caption-side: top;
text-align: left;
Expand Down Expand Up @@ -178,67 +174,67 @@ <h2>HPO terms</h2>
<tbody>
<tr class="strng">
<th><em>n</em></th>
<th class="lft">HPO Term</th>
<th>HPO Term</th>
</tr>


<tr>
<td>50</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0001631">Atrial septal defect</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0001631">Atrial septal defect</a>
</td>
</tr>

<tr>
<td>41</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0001629">Ventricular septal defect</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0001629">Ventricular septal defect</a>
</td>
</tr>

<tr>
<td>40</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0002984">Hypoplasia of the radius</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0002984">Hypoplasia of the radius</a>
</td>
</tr>

<tr>
<td>36</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0001199">Triphalangeal thumb</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0001199">Triphalangeal thumb</a>
</td>
</tr>

<tr>
<td>32</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0009778">Short thumb</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0009778">Short thumb</a>
</td>
</tr>

<tr>
<td>32</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0009777">Absent thumb</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0009777">Absent thumb</a>
</td>
</tr>

<tr>
<td>30</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0001191">Abnormal carpal morphology</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0001191">Abnormal carpal morphology</a>
</td>
</tr>

<tr>
<td>27</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0001684">Secundum atrial septal defect</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0001684">Secundum atrial septal defect</a>
</td>
</tr>

<tr>
<td>15</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0003974">Absent radius</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0003974">Absent radius</a>
</td>
</tr>

<tr>
<td>14</td>
<td class="lft"><a href="https://hpo.jax.org/browse/term/HP:0031546">Cardiac conduction abnormality</a>
<td><a href="https://hpo.jax.org/browse/term/HP:0031546">Cardiac conduction abnormality</a>
</td>
</tr>

Expand Down Expand Up @@ -269,12 +265,12 @@ <h2>Diseases</h2>
<tbody>
<tr class="strng">
<th><em>n</em></th>
<th class="lft">Disease</th>
<th>Disease</th>
</tr>

<tr>
<td>156</td>
<td class="lft"><a href="https://hpo.jax.org/browse/disease/OMIM:142900">Holt-Oram syndrome</a>
<td><a href="https://hpo.jax.org/browse/disease/OMIM:142900">Holt-Oram syndrome</a>
</td>
</tr>

Expand All @@ -298,77 +294,77 @@ <h3>Top 10 variants</h3>
<tbody>
<tr class="strng">
<th><em>n</em></th>
<th class="lft">Variant key</th>
<th>Variant key</th>
<th>HGVS</th>
<th>Variant Class</th>
</tr>

<tr>
<td>22</td>
<td class="lft">12_114385521_114385521_C_T</td>
<td>12_114385521_114385521_C_T</td>
<td>c.710G>A (p.Arg237Gln)</td>
<td>MISSENSE_VARIANT</td>
</tr>

<tr>
<td>20</td>
<td class="lft">12_114401830_114401830_C_T</td>
<td>12_114401830_114401830_C_T</td>
<td>c.238G>A (p.Gly80Arg)</td>
<td>MISSENSE_VARIANT</td>
</tr>

<tr>
<td>8</td>
<td class="lft">12_114385563_114385563_G_A</td>
<td>12_114385563_114385563_G_A</td>
<td>c.668C>T (p.Thr223Met)</td>
<td>MISSENSE_VARIANT</td>
</tr>

<tr>
<td>6</td>
<td class="lft">12_114398675_114398675_G_T</td>
<td>12_114398675_114398675_G_T</td>
<td>c.408C>A (p.Tyr136Ter)</td>
<td>STOP_GAINED</td>
</tr>

<tr>
<td>5</td>
<td class="lft">12_114399514_114399514_A_C</td>
<td>12_114399514_114399514_A_C</td>
<td>c.361T>G (p.Trp121Gly)</td>
<td>MISSENSE_VARIANT, SPLICE_REGION_VARIANT</td>
</tr>

<tr>
<td>5</td>
<td class="lft">12_114398682_114398682_C_CG</td>
<td>12_114398682_114398682_C_CG</td>
<td>c.400dup (p.Arg134ProfsTer49)</td>
<td>FRAMESHIFT_VARIANT</td>
</tr>

<tr>
<td>5</td>
<td class="lft">12_114403792_114403792_C_CG</td>
<td>12_114403792_114403792_C_CG</td>
<td>c.106_107insC (p.Ser36ThrfsTer25)</td>
<td>FRAMESHIFT_VARIANT</td>
</tr>

<tr>
<td>4</td>
<td class="lft">12_114385474_114385474_A_G</td>
<td>12_114385474_114385474_A_G</td>
<td>c.755+2T>C (None)</td>
<td>SPLICE_DONOR_VARIANT</td>
</tr>

<tr>
<td>4</td>
<td class="lft">12_114398656_114398656_C_CG</td>
<td>12_114398656_114398656_C_CG</td>
<td>c.426dup (p.Ala143ArgfsTer40)</td>
<td>FRAMESHIFT_VARIANT</td>
</tr>

<tr>
<td>4</td>
<td class="lft">12_114403798_114403798_G_GC</td>
<td>12_114403798_114403798_G_GC</td>
<td>c.100dup (p.Ala34GlyfsTer27)</td>
<td>FRAMESHIFT_VARIANT</td>
</tr>
Expand All @@ -387,62 +383,62 @@ <h2>Variant effects</h2>
<table>
<tbody>
<tr class="strng">
<th class="lft">Variant effect</th>
<th>Variant effect</th>
<th>Count</th>
</tr>

<tr>
<td class="lft">MISSENSE_VARIANT</td>
<td>MISSENSE_VARIANT</td>
<td>85 (50%)</td>
</tr>

<tr>
<td class="lft">FRAMESHIFT_VARIANT</td>
<td>FRAMESHIFT_VARIANT</td>
<td>38 (22%)</td>
</tr>

<tr>
<td class="lft">STOP_GAINED</td>
<td>STOP_GAINED</td>
<td>19 (11%)</td>
</tr>

<tr>
<td class="lft">SPLICE_REGION_VARIANT</td>
<td>SPLICE_REGION_VARIANT</td>
<td>10 (6%)</td>
</tr>

<tr>
<td class="lft">SPLICE_DONOR_VARIANT</td>
<td>SPLICE_DONOR_VARIANT</td>
<td>7 (4%)</td>
</tr>

<tr>
<td class="lft">INFRAME_INSERTION</td>
<td>INFRAME_INSERTION</td>
<td>2 (1%)</td>
</tr>

<tr>
<td class="lft">STOP_RETAINED_VARIANT</td>
<td>STOP_RETAINED_VARIANT</td>
<td>2 (1%)</td>
</tr>

<tr>
<td class="lft">SPLICE_ACCEPTOR_VARIANT</td>
<td>SPLICE_ACCEPTOR_VARIANT</td>
<td>2 (1%)</td>
</tr>

<tr>
<td class="lft">SPLICE_DONOR_5TH_BASE_VARIANT</td>
<td>SPLICE_DONOR_5TH_BASE_VARIANT</td>
<td>2 (1%)</td>
</tr>

<tr>
<td class="lft">INTRON_VARIANT</td>
<td>INTRON_VARIANT</td>
<td>2 (1%)</td>
</tr>

<tr>
<td class="lft">INFRAME_DELETION</td>
<td>INFRAME_DELETION</td>
<td>1 (1%)</td>
</tr>

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6 changes: 1 addition & 5 deletions docs/report/tbx5_truncating_vs_missense.mtc_report.html
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table td,
tr {
text-align: right;
text-align: left;
padding: 0px 5px;
}

Expand All @@ -120,10 +120,6 @@
background-color: var(--gpsea-color-surface-a20);
}

.lft {
text-align: left;
}

caption {
caption-side: top;
text-align: left;
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6 changes: 1 addition & 5 deletions docs/user-guide/analyses/report/tbx5_frameshift.mtc_report.html
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Expand Up @@ -108,7 +108,7 @@

table td,
tr {
text-align: right;
text-align: left;
padding: 0px 5px;
}

Expand All @@ -120,10 +120,6 @@
background-color: var(--gpsea-color-surface-a20);
}

.lft {
text-align: left;
}

caption {
caption-side: top;
text-align: left;
Expand Down
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