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Close STATS file for DOMINO mapping
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JFsanchezherrero committed Oct 15, 2018
1 parent d7bbe15 commit 36a41a8
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion src/perl/DM_MarkerScan_v1.0.3.pl
Original file line number Diff line number Diff line change
Expand Up @@ -1803,7 +1803,8 @@ =head1 CITATION
print STATS "Reads discarded (multimapping, unmapped, low quality reads): $discard_reads\n"; print LOG "Reads discarded (multimapping, unmapped, low quality reads): $discard_reads\n";
print STATS "Reads remaining: $good_reads\t( ".$h." %)\n"; print LOG "Reads remaining: $good_reads\t( ".$h." %)\n";
print LOG "============================================================\n";
print LOG "\n\n\n";
print STATS "============================================================\n";
print LOG "\n\n\n"; close (STATS);

DOMINO::printDump(\%domino_files_split_mapping, $domino_files{$reads}{"DUMP_Mapping::Ref:".$reference_identifier}[0]);
$pm_read_Reference->finish(); # pass an exit code to finish
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