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2 changes: 1 addition & 1 deletion dev/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 2eb5a779a36dd812720df0e1e2828fb1
config: 10304d6231b7737bf0a1ec8aeb36f434
tags: 645f666f9bcd5a90fca523b33c5a78b7
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2 changes: 1 addition & 1 deletion dev/_modules/index.html
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Expand Up @@ -541,7 +541,7 @@ <h1>All modules for which code is available</h1>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/copyfiles.html
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Expand Up @@ -1178,7 +1178,7 @@ <h1>Source code for mne_bids.copyfiles</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/dig.html
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Expand Up @@ -1326,7 +1326,7 @@ <h1>Source code for mne_bids.dig</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/inspect.html
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Expand Up @@ -989,7 +989,7 @@ <h1>Source code for mne_bids.inspect</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/_modules/mne_bids/path.html
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Expand Up @@ -2477,7 +2477,7 @@ <h1>Source code for mne_bids.path</h1><div class="highlight"><pre>

<span class="sd"> References</span>
<span class="sd"> ----------</span>
<span class="sd"> .. [1] https://bids-specification.rtfd.io/en/latest/common-principles.html#entities # noqa: E501</span>
<span class="sd"> .. [1] https://bids-specification.rtfd.io/en/latest/common-principles.html#entities</span>

<span class="sd"> &quot;&quot;&quot;</span>
<span class="n">root</span> <span class="o">=</span> <span class="n">_check_fname</span><span class="p">(</span>
Expand Down Expand Up @@ -3017,7 +3017,7 @@ <h1>Source code for mne_bids.path</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/read.html
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Expand Up @@ -1688,7 +1688,7 @@ <h1>Source code for mne_bids.read</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/report/_report.html
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Expand Up @@ -1072,7 +1072,7 @@ <h1>Source code for mne_bids.report._report</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/sidecar_updates.html
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Expand Up @@ -923,7 +923,7 @@ <h1>Source code for mne_bids.sidecar_updates</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/stats.html
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Expand Up @@ -658,7 +658,7 @@ <h1>Source code for mne_bids.stats</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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3 changes: 2 additions & 1 deletion dev/_modules/mne_bids/utils.html
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Expand Up @@ -1025,6 +1025,7 @@ <h1>Source code for mne_bids.utils</h1><div class="highlight"><pre>
<span class="n">module</span><span class="o">=</span><span class="s2">&quot;mne_bids&quot;</span><span class="p">,</span>
<span class="n">ignore_namespaces</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;mne&quot;</span><span class="p">,</span> <span class="s2">&quot;mne_bids&quot;</span><span class="p">),</span>
<span class="p">):</span> <span class="c1"># noqa: D103</span>
<span class="w"> </span><span class="sd">&quot;&quot;&quot;Emit a warning.&quot;&quot;&quot;</span>
<span class="n">_warn</span><span class="p">(</span>
<span class="n">message</span><span class="p">,</span>
<span class="n">category</span><span class="o">=</span><span class="n">category</span><span class="p">,</span>
Expand Down Expand Up @@ -1075,7 +1076,7 @@ <h1>Source code for mne_bids.utils</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/_modules/mne_bids/write.html
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Expand Up @@ -3659,7 +3659,7 @@ <h1>Source code for mne_bids.write</h1><div class="highlight"><pre>
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/api.html
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Expand Up @@ -751,7 +751,7 @@ <h2>mne_bids.copyfiles<a class="headerlink" href="#mne-bids-copyfiles" title="Pe
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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2 changes: 1 addition & 1 deletion dev/authors.html
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Expand Up @@ -549,7 +549,7 @@
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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64 changes: 32 additions & 32 deletions dev/auto_examples/anonymize_dataset.html
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Expand Up @@ -653,18 +653,18 @@ <h2>Basic anonymization<a class="headerlink" href="#basic-anonymization" title="
Input: /home/circleci/mne_data/MNE-sample-data-bids
Output: /home/circleci/mne_data/MNE-sample-data-bids-anon

Shifting recording dates by 32878 days (90.1 years).
Shifting recording dates by 30214 days (82.8 years).
Using the following subject ID anonymization mapping:

sub-ABC123 → sub-1
sub-emptyroom → sub-emptyroom


0%| | Anonymizing : 0/5 [00:00&lt;?, ?it/s]
20%|██ | Anonymizing : 1/5 [00:00&lt;00:01, 2.15it/s]
40%|████ | Anonymizing : 2/5 [00:03&lt;00:05, 1.72s/it]
60%|██████ | Anonymizing : 3/5 [00:04&lt;00:03, 1.51s/it]
100%|██████████| Anonymizing : 5/5 [00:04&lt;00:00, 1.11it/s]
20%|██ | Anonymizing : 1/5 [00:00&lt;00:01, 3.72it/s]
40%|████ | Anonymizing : 2/5 [00:02&lt;00:03, 1.22s/it]
60%|██████ | Anonymizing : 3/5 [00:03&lt;00:02, 1.04s/it]
100%|██████████| Anonymizing : 5/5 [00:03&lt;00:00, 1.61it/s]
</pre></div>
</div>
<p>That’s it! Let’s have a look at directory structure of the anonymized
Expand Down Expand Up @@ -692,12 +692,12 @@ <h2>Basic anonymization<a class="headerlink" href="#basic-anonymization" title="
|--------- sub-1_task-audiovisual_meg.fif
|--------- sub-1_task-audiovisual_meg.json
|--- sub-emptyroom/
|------ ses-19121130/
|--------- sub-emptyroom_ses-19121130_scans.tsv
|------ ses-19200317/
|--------- sub-emptyroom_ses-19200317_scans.tsv
|--------- meg/
|------------ sub-emptyroom_ses-19121130_task-noise_channels.tsv
|------------ sub-emptyroom_ses-19121130_task-noise_meg.fif
|------------ sub-emptyroom_ses-19121130_task-noise_meg.json
|------------ sub-emptyroom_ses-19200317_task-noise_channels.tsv
|------------ sub-emptyroom_ses-19200317_task-noise_meg.fif
|------------ sub-emptyroom_ses-19200317_task-noise_meg.json
</pre></div>
</div>
<p>You can see that the subject ID was changed to a number (in this case, the
Expand Down Expand Up @@ -735,8 +735,8 @@ <h2>Limiting to specific data types<a class="headerlink" href="#limiting-to-spec


0%| | Anonymizing : 0/1 [00:00&lt;?, ?it/s]
100%|██████████| Anonymizing : 1/1 [00:02&lt;00:00, 2.90s/it]
100%|██████████| Anonymizing : 1/1 [00:02&lt;00:00, 2.91s/it]
100%|██████████| Anonymizing : 1/1 [00:02&lt;00:00, 2.10s/it]
100%|██████████| Anonymizing : 1/1 [00:02&lt;00:00, 2.10s/it]
|MNE-sample-data-bids-anon/
|--- README
|--- dataset_description.json
Expand Down Expand Up @@ -778,9 +778,9 @@ <h2>Specifying time shift<a class="headerlink" href="#specifying-time-shift" tit


0%| | Anonymizing : 0/4 [00:00&lt;?, ?it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:01, 2.15it/s]
50%|█████ | Anonymizing : 2/4 [00:01&lt;00:01, 1.30it/s]
100%|██████████| Anonymizing : 4/4 [00:01&lt;00:00, 2.60it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:00, 3.68it/s]
50%|█████ | Anonymizing : 2/4 [00:00&lt;00:00, 2.03it/s]
100%|██████████| Anonymizing : 4/4 [00:00&lt;00:00, 4.09it/s]
|sub-emptyroom/
|--- ses-20021126/
|------ sub-emptyroom_ses-20021126_scans.tsv
Expand Down Expand Up @@ -818,17 +818,17 @@ <h2>Specifying subject IDs<a class="headerlink" href="#specifying-subject-ids" t
Input: /home/circleci/mne_data/MNE-sample-data-bids
Output: /home/circleci/mne_data/MNE-sample-data-bids-anon

Shifting recording dates by 32254 days (88.4 years).
Shifting recording dates by 33865 days (92.8 years).
Using the following subject ID anonymization mapping:

sub-ABC123 → sub-anonymous
sub-emptyroom → sub-emptyroom


0%| | Anonymizing : 0/4 [00:00&lt;?, ?it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:01, 2.13it/s]
50%|█████ | Anonymizing : 2/4 [00:01&lt;00:01, 1.31it/s]
100%|██████████| Anonymizing : 4/4 [00:01&lt;00:00, 2.63it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:00, 3.77it/s]
50%|█████ | Anonymizing : 2/4 [00:00&lt;00:00, 2.06it/s]
100%|██████████| Anonymizing : 4/4 [00:00&lt;00:00, 4.14it/s]
|MNE-sample-data-bids-anon/
|--- README
|--- dataset_description.json
Expand All @@ -846,12 +846,12 @@ <h2>Specifying subject IDs<a class="headerlink" href="#specifying-subject-ids" t
|--------- sub-anonymous_task-audiovisual_meg.fif
|--------- sub-anonymous_task-audiovisual_meg.json
|--- sub-emptyroom/
|------ ses-19140816/
|--------- sub-emptyroom_ses-19140816_scans.tsv
|------ ses-19100319/
|--------- sub-emptyroom_ses-19100319_scans.tsv
|--------- meg/
|------------ sub-emptyroom_ses-19140816_task-noise_channels.tsv
|------------ sub-emptyroom_ses-19140816_task-noise_meg.fif
|------------ sub-emptyroom_ses-19140816_task-noise_meg.json
|------------ sub-emptyroom_ses-19100319_task-noise_channels.tsv
|------------ sub-emptyroom_ses-19100319_task-noise_meg.fif
|------------ sub-emptyroom_ses-19100319_task-noise_meg.json
</pre></div>
</div>
</section>
Expand Down Expand Up @@ -908,9 +908,9 @@ <h2>Reproducibility<a class="headerlink" href="#reproducibility" title="Permalin


0%| | Anonymizing : 0/4 [00:00&lt;?, ?it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:01, 2.34it/s]
50%|█████ | Anonymizing : 2/4 [00:01&lt;00:01, 1.37it/s]
100%|██████████| Anonymizing : 4/4 [00:01&lt;00:00, 2.74it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:00, 3.79it/s]
50%|█████ | Anonymizing : 2/4 [00:00&lt;00:00, 2.06it/s]
100%|██████████| Anonymizing : 4/4 [00:00&lt;00:00, 4.15it/s]
|MNE-sample-data-bids-anon/
|--- README
|--- dataset_description.json
Expand Down Expand Up @@ -953,9 +953,9 @@ <h2>Reproducibility<a class="headerlink" href="#reproducibility" title="Permalin


0%| | Anonymizing : 0/4 [00:00&lt;?, ?it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:01, 2.15it/s]
50%|█████ | Anonymizing : 2/4 [00:01&lt;00:01, 1.32it/s]
100%|██████████| Anonymizing : 4/4 [00:01&lt;00:00, 2.65it/s]
25%|██▌ | Anonymizing : 1/4 [00:00&lt;00:00, 3.77it/s]
50%|█████ | Anonymizing : 2/4 [00:00&lt;00:00, 2.06it/s]
100%|██████████| Anonymizing : 4/4 [00:00&lt;00:00, 4.13it/s]
|MNE-sample-data-bids-anon/
|--- README
|--- dataset_description.json
Expand All @@ -981,7 +981,7 @@ <h2>Reproducibility<a class="headerlink" href="#reproducibility" title="Permalin
|------------ sub-emptyroom_ses-19221211_task-noise_meg.json
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 16.026 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 10.727 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-anonymize-dataset-py">
<div class="binder-badge docutils container">
<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/anonymize_dataset.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -1072,7 +1072,7 @@ <h2>Reproducibility<a class="headerlink" href="#reproducibility" title="Permalin
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/auto_examples/bidspath.html
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Expand Up @@ -730,7 +730,7 @@
<p>By default, most MNE-BIDS functions will try to infer to correct
suffix and extension for your data, and you don’t need to specify them
manually.</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.007 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.005 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-bidspath-py">
<div class="binder-badge docutils container">
<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/bidspath.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -802,7 +802,7 @@
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/auto_examples/convert_eeg_to_bids.html
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Expand Up @@ -1110,7 +1110,7 @@ <h2>Cite mne-bids<a class="headerlink" href="#cite-mne-bids" title="Permalink to
command line tool:</p>
<p>Web version: <a class="reference external" href="https://bids-standard.github.io/bids-validator/">https://bids-standard.github.io/bids-validator/</a></p>
<p>Command line tool: <a class="reference external" href="https://www.npmjs.com/package/bids-validator">https://www.npmjs.com/package/bids-validator</a></p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.804 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.561 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-convert-eeg-to-bids-py">
<div class="binder-badge docutils container">
<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/convert_eeg_to_bids.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -1199,7 +1199,7 @@ <h2>Cite mne-bids<a class="headerlink" href="#cite-mne-bids" title="Permalink to
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/auto_examples/convert_empty_room.html
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Expand Up @@ -852,7 +852,7 @@
&lt;Raw | sub-emptyroom_ses-20021204_task-noise_meg.fif, 315 x 66068 (110.0 s), ~354 kB, data not loaded&gt;
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 2.970 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 1.752 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-convert-empty-room-py">
<div class="binder-badge docutils container">
<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/convert_empty_room.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -924,7 +924,7 @@
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/auto_examples/convert_group_studies.html
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Expand Up @@ -934,7 +934,7 @@
0.0 were removed from analysis).
</pre></div>
</div>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.340 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 2.142 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-convert-group-studies-py">
<div class="binder-badge docutils container">
<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/convert_group_studies.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -1006,7 +1006,7 @@
<div class="footer-item">
<p class="copyright">

© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
<br/>

</p>
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4 changes: 2 additions & 2 deletions dev/auto_examples/convert_ieeg_to_bids.html
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Expand Up @@ -1470,7 +1470,7 @@ <h2>Step 5: Store coordinates in a template space<a class="headerlink" href="#st
recommend, if at all possible, saving BIDS iEEG data in ACPC coordinate space
corresponding to the individual subject’s brain, not in a template
coordinate frame.</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 6.913 seconds)</p>
<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 4.873 seconds)</p>
<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-convert-ieeg-to-bids-py">
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<a class="reference external image-reference" href="https://mybinder.org/v2/gh/mne-tools/mne-bids/gh-pages?filepath=dev/notebooks/auto_examples/convert_ieeg_to_bids.ipynb"><img alt="Launch binder" src="../_images/binder_badge_logo.svg" width="150px" /></a>
Expand Down Expand Up @@ -1562,7 +1562,7 @@ <h2>Step 5: Store coordinates in a template space<a class="headerlink" href="#st
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© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-27.
© Copyright 2017-2023, MNE Developers. Last updated on 2023-09-30.
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