Bump ruff to v0.3.0 (#1232)

Co-authored-by: Stefan Appelhoff <[email protected]>

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.2.2
+    rev: v0.3.0
     hooks:
       - id: ruff
         name: ruff mne_bids/

mne_bids/commands/mne_bids_count_events.py

@@ -3,6 +3,7 @@
 example usage:  $ mne_bids count_events --bids_root bids_root_path
 
 """
+
 # Authors: Alex Gramfort <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/commands/mne_bids_cp.py

@@ -2,6 +2,7 @@
 
 example usage: $ mne_bids cp --input myfile.vhdr --output sub-01_task-test.vhdr
 """
+
 # Authors: Stefan Appelhoff <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/commands/mne_bids_raw_to_bids.py

@@ -4,6 +4,7 @@
 --raw data.edf --bids_root new_path
 
 """
+
 # Authors: Teon Brooks <[email protected]>
 #          Stefan Appelhoff <[email protected]>
 #

mne_bids/commands/mne_bids_report.py

@@ -3,6 +3,7 @@
 example usage:  $ mne_bids report --bids_root bids_root_path
 
 """
+
 # Authors: Alexandre Gramfort <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/commands/run.py

@@ -1,4 +1,5 @@
 """Command Line Interface for MNE-BIDS."""
+
 # Authors: Teon Brooks <[email protected]>
 #          Stefan Appelhoff <[email protected]>
 #

mne_bids/commands/tests/test_cli.py

@@ -1,4 +1,5 @@
 """Test command line."""
+
 # Authors: Teon L Brooks <[email protected]>
 #          Stefan Appelhoff <[email protected]>
 #

mne_bids/config.py

@@ -1,4 +1,5 @@
 """Configuration values for MNE-BIDS."""
+
 from mne import io
 from mne.io.constants import FIFF
 
@@ -444,9 +445,9 @@
 
 for letter in ("a", "b", "c"):
     for sym in ("Sym", "Asym"):
-        BIDS_COORD_FRAME_DESCRIPTIONS[
-            f"mni152nlin2009{letter}{sym}"
-        ] = "Also known as ICBM (non-linear coregistration with 40 iterations,"
+        BIDS_COORD_FRAME_DESCRIPTIONS[f"mni152nlin2009{letter}{sym}"] = (
+            "Also known as ICBM (non-linear coregistration with 40 iterations,"
+        )
         " released in 2009). It comes in either three different flavours "
         "each in symmetric or asymmetric version."
 

mne_bids/conftest.py

@@ -1,4 +1,5 @@
 """Configure all tests."""
+
 import mne
 import pytest
 

mne_bids/copyfiles.py

@@ -6,6 +6,7 @@
 due to internal pointers that are not being updated.
 
 """
+
 # Authors: Mainak Jas <[email protected]>
 #          Alexandre Gramfort <[email protected]>
 #          Teon Brooks <[email protected]>

mne_bids/dig.py

@@ -1,4 +1,5 @@
 """Read/write BIDS compatible electrode/coords structures from MNE."""
+
 # Authors: Adam Li <[email protected]>
 #          Stefan Appelhoff <[email protected]>
 #          Alex Rockhill <[email protected]>

mne_bids/path.py

@@ -1,4 +1,5 @@
 """BIDS compatible path functionality."""
+
 # Authors: Adam Li <[email protected]>
 #          Stefan Appelhoff <[email protected]>
 #

mne_bids/pick.py

@@ -1,4 +1,5 @@
 """Define coil types for MEG."""
+
 # Authors: Matt Sanderson <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/read.py

@@ -1,4 +1,5 @@
 """Check whether a file format is supported by BIDS and then load it."""
+
 # Authors: Mainak Jas <[email protected]>
 #          Alexandre Gramfort <[email protected]>
 #          Teon Brooks <[email protected]>

mne_bids/report/_report.py

@@ -1,4 +1,5 @@
 """Make BIDS report from dataset and sidecar files."""
+
 # Authors: Adam Li <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/stats.py

@@ -4,7 +4,6 @@
 #
 # License: BSD-3-Clause
 
-
 from mne_bids import BIDSPath, get_datatypes
 from mne_bids.config import EPHY_ALLOWED_DATATYPES
 

mne_bids/tests/conftest.py

@@ -1,4 +1,5 @@
 """Configure tests."""
+
 import os
 import platform
 

mne_bids/tests/test_copyfiles.py

@@ -1,4 +1,5 @@
 """Testing copyfile functions."""
+
 # Authors: Chris Holdgraf <[email protected]>
 #          Mainak Jas <[email protected]>
 #          Stefan Appelhoff <[email protected]>

mne_bids/tests/test_path.py

@@ -1,4 +1,5 @@
 """Test for the MNE BIDSPath functions."""
+
 # Authors: Adam Li <[email protected]>
 #          Richard Höchenberger <[email protected]>
 #

mne_bids/tests/test_read.py

@@ -1,4 +1,5 @@
 """Testing utilities for file io."""
+
 # Authors: Stefan Appelhoff <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/tests/test_report.py

@@ -1,4 +1,5 @@
 """Testing automatic BIDS report."""
+
 # Authors: Adam Li <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/tests/test_tsv_handler.py

@@ -3,7 +3,6 @@
 #
 # License: BSD-3-Clause
 
-
 from collections import OrderedDict as odict
 
 import pytest

mne_bids/tests/test_update.py

@@ -1,4 +1,5 @@
 """Test for the MNE BIDS updating of BIDS datasets."""
+
 # Authors: Adam Li <[email protected]>
 #
 # License: BSD-3-Clause

mne_bids/tests/test_utils.py

@@ -1,4 +1,5 @@
 """Testing utilities for the MNE BIDS converter."""
+
 # Authors: Chris Holdgraf <[email protected]>
 #          Mainak Jas <[email protected]>
 #          Stefan Appelhoff <[email protected]>

mne_bids/tests/test_write.py

@@ -2,6 +2,7 @@
 
 For each supported file format, implement a test.
 """
+
 # Authors: Mainak Jas <[email protected]>
 #          Teon L Brooks <[email protected]>
 #          Chris Holdgraf <[email protected]>

mne_bids/tsv_handler.py

@@ -1,4 +1,5 @@
 """Private functions to handle tabular data."""
+
 from collections import OrderedDict
 from copy import deepcopy
 

mne_bids/utils.py

@@ -1,4 +1,5 @@
 """Utility and helper functions for MNE-BIDS."""
+
 # Authors: Mainak Jas <[email protected]>
 #          Alexandre Gramfort <[email protected]>
 #          Teon Brooks <[email protected]>

mne_bids/write.py

@@ -1,4 +1,5 @@
 """Make BIDS compatible directory structures and infer meta data from MNE."""
+
 # Authors: Mainak Jas <[email protected]>
 #          Alexandre Gramfort <[email protected]>
 #          Teon Brooks <[email protected]>

pyproject.toml

@@ -55,7 +55,7 @@ full = [
     "pandas >= 1.3.2",
     "EDFlib-Python >= 1.0.6", # drop once mne <1.7 is no longer supported
     "edfio >= 0.2.1",
-    "defusedxml", # For reading EGI MFF data abd BrainVision monatges
+    "defusedxml",             # For reading EGI MFF data abd BrainVision monatges
 ]
 
 # Dependencies for running the test infrastructure
@@ -107,11 +107,11 @@ exclude = [
 source = "vcs"
 raw-options = { version_scheme = "release-branch-semver" }
 
-[tool.ruff]
+[tool.ruff.lint]
 select = ["E", "F", "W", "D", "I"]
 exclude = ["__init__.py"]
 
-[tool.ruff.pydocstyle]
+[tool.ruff.lint.pydocstyle]
 convention = "numpy"
 
 [tool.coverage.run]