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Prep conduit manuscript#166

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mmore500 wants to merge 145 commits intomastermmore500/conduit:masterfrom manuscript-prepmmore500/conduit:manuscript-prepCopy head branch name to clipboard

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Commits

Commits on Oct 20, 2023

• Prototype new analyses/methods

  mmore500

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  1f984e5

• Switch Docker from git:// to https://

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  b3f66b2

• Replace OLS regression, fixup rest of metrics

  mmore500

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  062f718

• Disable git safe directory

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  mmore500

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  4a2bf9b

• Add suggested git safe dir except

  mmore500

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  0519f9b

• Try setting git safedir in CI step

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  1cc1ff3

Commits on Oct 31, 2023

• Catch median ValueError and warn

  mmore500

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  c2bb63b

• Impl, test performance-semantics plot

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  115cfe8

Commits on Nov 1, 2023

• Remove redundant code

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  ece4de7

• Polish perforamce-semantics plot design

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  c5c6a13

Commits on Nov 3, 2023

• Implement, test hash_with_lax_fallback

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  9a51e83

• Implement, test UnequalSentinel

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  58bf830

• Implement, test lru_cache_universal

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  e5dd6d2

• Impl, test seaborn kde-caching monkeypatch

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  e7692f7

• Bugfix: don't override hue_order

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  8ad85a4

Commits on Nov 5, 2023

• Fix bad __all__ in __init__

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  a5975eb

• Impl, test round_to_multiple util

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  e5d7ccc

• Bugfix: use robust equals for Pandas support

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  c7e475e

• Implement, test splice

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  a3ef533

• Impl, test compact_xaxis_units

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  dda2b4e

• Break out kde fill, prep for facet figure

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  83fe842

Commits on Nov 6, 2023

• Rename to performance_semantics_{kde,scatter}plot

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  8942912

• Fix func name axis_limits -> axis_lims

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  beab009

• Switch default palette to gold/purple/teal

  mmore500

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  bf11e45

• Fixup hue_order setup and checks

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  b671206

• Take legend font path by arg

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  5c99aa4

• Impl performance-semantics facetplot composite

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  904c827

• Set editorconfig python indent 2 -> 4

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  20107fe

• Bugfix: show smear unflagged should hide smear

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  183c9ab

• Reflow overlength comment

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  42cd9e3

Commits on Nov 9, 2023

• Update smear default styling

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  9be85c1

• Impl, test pickle_cache

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  8980817

Commits on Nov 10, 2023

• Implement data wrangling helpers

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  5520bb0

• Implement beleaguerment regplot

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  3fb2774

• Make equals_by_value support nested lists and dict

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  8fd8302

• Implement beleaguerment facetplot

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  b1c4bc9

• Bugfix: use hue_order in beleaguerment viz

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  ec65d59

• Add lac 417 beleaguerment notebook

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  8341b8e

• Implement apply_symmetric_axes helper

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  3adf5b3

• Bugfix: missing -1 to longitudinal bunching calc

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  23ceb98

• Alias new bunchiness metric to clumpiness, etc.

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  f8f4f38

• Apply black format

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  809dd23

• Impl runtime indicator regplot, pairplot

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  c3d3b3f

• Impl, test perruntime indicators concat

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  9254999

• Commit missing instrumentation wrangling content

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  628fe4e

• Fix smear errorbar calculation

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  3b7b790

• Make performance semantics notebook

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  c31aecf

• Fixup beleaguerment notebook

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  579b674

• Handle desserial except in pickle_cache

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  eed820d

• Factor out copy/paste spam from lac-417 nb

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  d91fa36

• Update python requirements, fiddle with pins

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  4c24f41

• Pin older bidict that docker build can find

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  1da20db

• Put venv on Docker path to upgrade python to 3.8

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  d84dcd8

• Try installing packages and curling gpg key

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  3956ce2

• Try another Docker setup strategy

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  f8513d0

• Try adding deadsnames with RUN command

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  1df548d

• Bump ubuntu 18 -> 20

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  beb0f24

• Fix Dockerfile syntax error

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  e725163

• Drop python3.8 sideload, it's default on ubuntu 20

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  42a87b3

• Try an amd64 digest

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  84c70b3

• Update apt packages ubuntu 18 -> 20

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  dc85f0c

• Try using aptitude to fix apt versioning issue

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  204e083

• Remove special install for newer git

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  8e80528

• Try installing software-properties-common with apt

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  6cdd2ff

• Try installing compilers directly, not through ppa

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  42cb0f4

• Install git with apt not aptitude

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  3441f82

• Try removing deletion of updates repositories

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  2653a67

• Try cache clean to fix npm crash

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  f4bd73c

• Try fix npm crash with manual semver install

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  502c757

• Try pinning semver and reinitializing path

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  60633d1

• Bump numpy back to provide statsmodels MachAr

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  db656bd

Commits on Nov 11, 2023

• Drop back mplotlib pin for pandas compat

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  f512524

• Delete unneeded Dockerfile content

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  7bfc681

• Strip out dead code

  mmore500

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  93e4882

• Create intra/internode beleaguerment notebook

  mmore500

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  d194103

• Hide regplot artifacts from summary panel

  mmore500

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  7e87da3

• Fix bad column aliasing

  mmore500

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  0a80dbc

• Fixup imports

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  8e8bc24

Commits on Nov 12, 2023

• Bugfix: handle case where hue not provided

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  d629711

• Implement DrawBatched functor

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  dace623

• Impl open_dymmy_axis context

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  fe5535b

• Apply column alias incl/excl lac417

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  2d4ecd0

• Restyle beleaguerment plots

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  387f497

• Restyle performance semantics scatter

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  fda2f01

• Add computation/communication beleaguerment nb

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  f7794ac

• Set max_line_length in editorconfig

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  8d510aa

• fixup! Restyle performance semantics scatter

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  75e8612

• Fix whitespace

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  647b68c

• Remove unnecessary dropna

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  94a0ae8

Commits on Nov 13, 2023

• Fix kwarg linewidth -> linewidths

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  659519b

• Fix missing column key error

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  146ded7

Commits on Nov 14, 2023

• Bugfix: remember to unpack kwargs

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  bb564bb

• Bugfix: prevent and handle zero batches case

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  024aa8b

Commits on Nov 18, 2023

• Add comp vs com beleaguerment nb

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  92261e7

• Add thread vs proc beleaguerment nb

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  a4dbead

Commits on Nov 19, 2023

• Fix copy/paste nb name

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  eef03bd

• Add weak scaling beleaguerment nb

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  9f85640

• Fix copy/paste name

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  1441e18

• Bugfix: ps kdeplot should respect hue_order

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  4df5370

• Bugfix: use linewidth kwarg, not linewidths

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  4b7de5b

• Add inter/intranode psp nb

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  805bd3e

• Fix copy/paste nb name

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  4fcbf4a

• Add multithread/proc psp notebook

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  605757f

• Handle orders of magnitude % 3 != 0

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  5c03186

• Add fourth entry to style carousel

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  5a26b1e

• Fix style handling in perf semantics plots

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  bd5767f

• Style code

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  26aa12d

• Take and forward subplot kwargs

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  bf7d963

• Add option to disable shared x/y axis scales

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  54b7bd2

• Fork clean notebook operations for speedup

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  17a9da4

• Add comp vs comm ps plot notebook

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  091e5e9

• Add weak scaling performance semantics nb

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  f5100fb

• Remove unused copy/paste cruft

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  6ab8571

• Alphabetize kwargs

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  ba4b0c1

Commits on Nov 20, 2023

• Exclude outliers and mark on axis edges

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  54ae9d9

• Improve off-axis outlier annotation

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  e53ffad

• Add marker helper (not currently used)

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  b66b956

Commits on Nov 30, 2023

• Set higher keyname chop threshold

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  87ea1ef

• Disable notebook causing timeout

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  c1217d0

• Bump keyname version for bugfix

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  845266b

• Try parallelizing the notebook job with larger runner

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  c9c9eac

• Pin notebook container to skip build-per-commit

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  c01f835

• Revert "Try parallelizing the notebook job with larger runner"

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  3878d1f

• Try parallelizing the notebook job with larger runner

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  025c28c

• Pin notebook container to skip build-per-commit

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  7d2897a

• Revert "Try parallelizing the notebook job with larger runner"

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  d8149b7

• Use non-recursive approach to parallelize nb execution

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  16ae1f3

• Don't use source inside container, clone it instead

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  ff77899

• Drop build dependency

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  1ddf836

• Remove broken pip install

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  c4f6e6a

• Fix execute notebook nb discovery recursion

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  1aad5ae

• Disable broken notebook

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  a2f6d94

• Try staying in root directory

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  bf84201

• Run git repo/user setup on deploy

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  f456022

• Fix safe directory exception

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  2098679

• Bugfix: mark current directory safe for git

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  90b22f1

• Try setting safe directory to glob

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  b64d24b

• Re-enable notebook evaluation

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  548e284

• Try setting KEYNAME_CHOP_CHUNK_SIZE inside eval job

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  2b48388

• Bump keyname pin for better error diagnostics

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  e714f2c

• Bump container for newer python deps

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  0fab056

• Disable broken notebook

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• Add ghostscript to container

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  4c86547

• Bump container pin to get ghostscript

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  19da8ff

• Restore notebook, wasn't broken

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