CI #718
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ master, dev ] | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: | |
| - cron: '0 0 * * 0' | |
| jobs: | |
| docker-build: | |
| name: Docker Build | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: Push to DockerHub | |
| uses: docker/build-push-action@v1 | |
| with: | |
| push: true | |
| tags: GITHUB_ACTION_${{ github.run_number }} | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| repository: mmore500/conduit | |
| add_git_labels: true | |
| tidy: | |
| name: Tidy | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --user root | |
| steps: | |
| - run: /opt/conduit/conduitpylib/test/run_tests.sh | |
| - run: | | |
| cd /opt/conduit | |
| ./ci/test_tidy.sh | |
| binder: | |
| name: Notebooks | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --user root | |
| steps: | |
| # Adapted from https://askubuntu.com/a/524368 | |
| - run: cd /opt/conduit/binder && ./execute_notebooks.sh | |
| - run: git init | |
| - uses: fregante/setup-git-user@v1 | |
| - run: git commit --allow-empty -m "Initial commit" | |
| - run: cp -r /opt/conduit/ deploy/ | |
| - uses: JamesIves/[email protected] | |
| with: | |
| branch: binder # The branch the action should deploy to. | |
| folder: deploy # The folder the action should deploy. | |
| - run: mkdir -p deploy-artifacts/ | |
| - run: cp -r /opt/conduit/binder/. deploy-artifacts/binder/ | |
| # adapted from https://unix.stackexchange.com/a/107647 | |
| - run: find deploy-artifacts/binder/ -type f ! \( -name '*.csv' -o -name '*.png' -o -name '*.jpg' -o -name '*.pdf' -o -name '*.json' -o -name '*.meta' -o -name '*.txt' -o -name '*.out' -o -name '*.ipynb' \) -delete | |
| # delete symlinks (Overleaf is not compatible with symlinks) | |
| # adapted from https://superuser.com/a/586948 | |
| - run: find deploy-artifacts/binder -type l -delete | |
| - uses: JamesIves/[email protected] | |
| with: | |
| branch: binder-artifacts # The branch the action should deploy to. | |
| folder: deploy-artifacts # The folder the action should deploy. | |
| unit: | |
| name: Unit Tests | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| strategy: | |
| matrix: | |
| mpicxx: [mpich, openmpi] | |
| mode: [ Debug, Opt ] | |
| fail-fast: false | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --user=user --cap-add=SYS_ADMIN | |
| env: | |
| DISH_MPICXX: mpicxx.${{ matrix.mpicxx }} | |
| OMPI_CXX: clang++ | |
| steps: | |
| # undo github actions override of HOME to "/home/github/" | |
| - run: | | |
| export HOME="/home/user/" | |
| cd /opt/conduit/ | |
| cmake -S . -B build -GNinja -DCMAKE_BUILD_TYPE=${{ matrix.mode }} -DMPI_EXECUTABLE_SUFFIX=.${{ matrix.mpicxx }} | |
| cmake --build build | |
| cd build | |
| ctest | |
| coverage: | |
| name: Coverage | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --cap-add=SYS_ADMIN | |
| env: | |
| DISH_MPICXX: mpicxx.openmpi | |
| OMPI_CXX: clang++ | |
| CC: clang | |
| CXX: clang++ | |
| # env variables listed in https://codecov.io/env | |
| GITHUB_HEAD_REF: ${{ github.head_ref }} | |
| GITHUB_REF: ${{ github.ref }} | |
| GITHUB_REPOSITORY: ${{ github.repository }} | |
| GITHUB_RUN_ID: ${{ github.run_id }} | |
| GITHUB_SERVER_URL: ${{ github.server_url }} | |
| GITHUB_SHA: ${{ github.sha }} | |
| GITHUB_WORKFLOW: ${{ github.workflow }} | |
| steps: | |
| - run: | | |
| cd /opt/conduit/ | |
| cmake -S . -B build -GNinja -DCMAKE_BUILD_TYPE=Debug -DCODE_COVERAGE=ON | |
| cmake --build build --target ccov-show-test-netuit | |
| cmake --build build --target ccov-show-test-uit | |
| cmake --build build --target ccov-show-test-uitsl | |
| # adapted from https://docs.codecov.com/docs/codecov-uploader | |
| curl -Os https://uploader.codecov.io/latest/linux/codecov | |
| chmod +x codecov | |
| ./codecov -t ${{ secrets.CODECOV_TOKEN }} | |
| # @MAM 10-2021: running manually because | |
| # codecov/codecov-action@v1 and @v2 don't work | |
| # due to permissions errors | |
| microbenchmarks: | |
| name: Microbenchmarks | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --cap-add=SYS_ADMIN | |
| env: | |
| OSF_USERNAME: ${{ secrets.OSF_USERNAME }} | |
| OSF_PASSWORD: ${{ secrets.OSF_PASSWORD }} | |
| CONTEXT: actions | |
| steps: | |
| - run: | | |
| cd /opt/conduit/microbenchmarks | |
| make | |
| macrobenchmarks: | |
| name: Macrobenchmarks | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --cap-add=SYS_ADMIN | |
| env: | |
| OSF_USERNAME: ${{ secrets.OSF_USERNAME }} | |
| OSF_PASSWORD: ${{ secrets.OSF_PASSWORD }} | |
| CONTEXT: actions | |
| steps: | |
| - run: | | |
| cd /opt/conduit/macrobenchmarks | |
| make | |
| docs: | |
| name: Source, Docs, Demos | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - docker-build | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| # github actions requires root to access mounted volumes | |
| options: --cap-add=SYS_ADMIN | |
| steps: | |
| # undo github actions override of HOME to "/home/github/" | |
| - run: | | |
| export HOME="/home/user/" | |
| cd /opt/conduit | |
| make test-source | |
| make docs | |
| make demos | |
| deploy-pages: | |
| name: Deploy to GitHub Pages | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: mmore500/conduit:GITHUB_ACTION_${{ github.run_number }} | |
| env: | |
| OSF_PASSWORD: ${{ secrets.OSF_PASSWORD }} | |
| OSF_USERNAME: ${{ secrets.OSF_USERNAME }} | |
| # github actions requires root to access mounted volumes | |
| options: --user root | |
| if: github.ref == 'refs/heads/master' | |
| needs: | |
| - binder | |
| - coverage | |
| - docs | |
| - macrobenchmarks | |
| - microbenchmarks | |
| - tidy | |
| - unit | |
| steps: | |
| - run: make -C /opt/conduit/ web | |
| - run: cp -r /opt/conduit/web/ web/ | |
| - uses: JamesIves/[email protected] | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH: gh-pages # The branch the action should deploy to. | |
| FOLDER: web # The folder the action should deploy. | |
| CLEAN: true # Automatically remove deleted files from the deploy branch | |
| deploy-dockerhub: | |
| name: Deploy to Dockerhub | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - binder | |
| - coverage | |
| - docs | |
| - macrobenchmarks | |
| - microbenchmarks | |
| - tidy | |
| - unit | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: Push to DockerHub | |
| uses: docker/build-push-action@v1 | |
| with: | |
| push: true | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| repository: mmore500/conduit | |
| tag_with_ref: true | |
| tag_with_sha: true |