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Following the MAPpoly workhshop for potato ( https://www.youtube.com/watch?v=NifLfBsQshQ ), I am running into issues whereby the get_solcap_snp_pos.R does not assign genome position e.g. number of markers per chromosome as done within the workshop.
print(dat, detailed = T) gives the same output before and after running source("get_solcap_snp_pos.R")
This is an object of class 'mappoly.data'
Ploidy level: 4
No. individuals: 156
No. markers: 6531
Prob. threshold to declare missing: 0.95
Missing data: 5.26%
Redundant markers: 7.92%
No. markers per chromosome: not available
----------
No. of markers per dosage combination in both parents:
P1 P2 freq
0 1 191
0 2 74
0 3 29
1 0 526
1 1 634
1 2 379
1 3 146
1 4 51
2 0 167
2 1 431
2 2 739
2 3 538
2 4 238
3 0 34
3 1 162
3 2 402
3 3 743
3 4 658
4 1 28
4 2 112
4 3 249
Given the time difference between my question and the workshop, I am inclined to think it might be a slight difference in potential language invoked by R due to updates. Additionally, there is a difference between mappoly packages used in the workshop (MAPpoly v0.2.1) and the current version (MAPpoly v0.3.3).
I am running R v4.3.1 (2023-06-16)
As the issue has not yet been described here, I was hoping you could provide some insights.
Many thanks in advance!
Kind regards,
Willem
The text was updated successfully, but these errors were encountered:
Dear Marcello,
Following the MAPpoly workhshop for potato ( https://www.youtube.com/watch?v=NifLfBsQshQ ), I am running into issues whereby the
get_solcap_snp_pos.R
does not assign genome position e.g. number of markers per chromosome as done within the workshop.print(dat, detailed = T)
gives the same output before and after runningsource("get_solcap_snp_pos.R")
Given the time difference between my question and the workshop, I am inclined to think it might be a slight difference in potential language invoked by R due to updates. Additionally, there is a difference between mappoly packages used in the workshop (
MAPpoly v0.2.1
) and the current version (MAPpoly v0.3.3
).I am running
R v4.3.1 (2023-06-16)
As the issue has not yet been described here, I was hoping you could provide some insights.
Many thanks in advance!
Kind regards,
Willem
The text was updated successfully, but these errors were encountered: