- Addressed the
--use-LTOinstallation failure issue
- Functions to build maps in individual parents
- Functions to merge individual maps
- Imputation functions based on map
- Functions to edit order interactively
- Fix minor bugs
- Fix minor bugs
- Added function find_blocks
- Added several utility functions
- Update function filter_individuals
- Update filtering graphics
- Update some color schemes
- Added function est_pairwise_rf2 to avoid memory overflow in personal computers when estimating recombination fraction in large number of markers.
- Added Vignette
- Added function 'export_qtlpoly'
- Added function 'filter_individuals'
- Changed the name of function 'calc_homoprob' to 'calc_homologprob'
- Added function plot_GIC
- Updated functions est_rf_hmm_sequential and read_fitpoly
- Verification for high-prec system support
- Added LazyDataCompression: xz in DESCRIPTION file
- Suggested packages are used conditionally, following §1.1.3.1 of 'Writing R Extensions'.
- Added estimation of two-point recombination fraction using genotype probabilities
- Added 'read_fitpoly' function
- New graphical feature in function 'rf_snp_filt'
- Added option to plot large recombination fraction matrix using cell aggregation for a given order
- Added estimation of map distance using the MDSMap package procedure (projects the MDS order onto a single dimension using principal curves)