Unified clinical vocabulary embeddings

data/index.html

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+                        <p class="title">Unified Clinical Vocabulary Embeddings</p>
+                        <p class="subtitle">Unified Clinical Vocabulary Embeddings</p>
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+
+                        <div class="content">
+                            <p><p>Integrating clinical knowledge into AI remains challenging despite standardized medical guidelines and vocabularies. Medical codes, central to healthcare systems, often reflect operational patterns shaped by geographic factors, national policies, insurance frameworks, and physician practices rather than the precise representation of clinical knowledge. This disconnect hampers AI in representing clinical relationships, raising concerns about bias, transparency, and generalizability.</p>
+
+<p>Here, we developed a resource of 67,124 clinical vocabulary embeddings derived from a clinical knowledge graph tailored to electronic health record vocabularies, spanning over 1.3 million edges. Using graph transformer neural networks, we generated clinical vocabulary embeddings that provide a new representation of clinical knowledge unified across seven medical vocabularies. We validated these embeddings through a phenotype risk score analysis involving 4.57 million patients from Clalit Healthcare Services, demonstrating their ability to stratify individuals by survival outcomes. Inter-institutional panels of clinicians evaluated the alignment of embedding with established clinical knowledge across 90 diseases and 3,000 clinical codes, confirming their robustness and transferability.</p>
+
+<p>This resource addresses the gap in integrating clinical vocabularies in AI models and training datasets and supports population and patient modelsin precision medicine.</p>
+</p>
+                        </div>
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+                        <a href="https://zitniklab.hms.harvard.edu/projects/Clinical-knowledge-embeddings" class="button is-primary">
+                            View the Clinical KG Embeddings Website
+                        </a>
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+
+
+                    </div>
+                </div>
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+            </div>
+        </section>
+
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-            <img src="/img/ada_fang.png" alt="<a href="#">Ada Fang</a>" />
+            <img src="/img/robert_calef.png" alt="<a href="https://scholar.google.com/citations?user=q7Yn0UwAAAAJ&hl=en">Robert Calef</a>" />
           </figure>
         </div>
 
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-          <p class="title is-5"><a href="#">Ada Fang</a></p>
-          <p class="subtitle is-6">PhD Student<br/>Harvard CCB<br/></p>
+          <p class="title is-5"><a href="https://scholar.google.com/citations?user=q7Yn0UwAAAAJ&hl=en">Robert Calef</a></p>
+          <p class="subtitle is-6">PhD Student<br/>MIT EECS<br/></p>
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+            <img src="/img/ada_fang.png" alt="<a href="#">Ada Fang</a>" />
           </figure>
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-          <p class="title is-5"><a href="https://scholar.google.com/citations?user=q7Yn0UwAAAAJ&hl=en">Robert Calef</a></p>
-          <p class="subtitle is-6">PhD Student<br/>MIT EECS<br/></p>
+          <p class="title is-5"><a href="#">Ada Fang</a></p>
+          <p class="subtitle is-6">PhD Student<br/>Harvard CCB<br/></p>
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-            <img src="/img/jason_poulos.png" alt="<a href="https://jasonvpoulos.com/">Jason Poulos</a>" />
+            <img src="/img/michelle_li.png" alt="<a href="https://michellemli.com/">Michelle M. Li</a>" />
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-          <p class="title is-5"><a href="https://jasonvpoulos.com/">Jason Poulos</a></p>
-          <p class="subtitle is-6">Postdoctoral Fellow<br/>Brigham and Women's Hospital<br/></p>
+          <p class="title is-5"><a href="https://michellemli.com/">Michelle M. Li</a></p>
+          <p class="subtitle is-6">Postdoctoral Fellow<br/>Harvard Berkowitz Fellow<br/></p>
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+            <img src="/img/ruth_johnson.png" alt="<a href="https://ruthjohnson95.github.io/">Ruth Johnson</a>" />
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-          <p class="title is-5"><a href="https://michellemli.com/">Michelle M. Li</a></p>
+          <p class="title is-5"><a href="https://ruthjohnson95.github.io/">Ruth Johnson</a></p>
           <p class="subtitle is-6">Postdoctoral Fellow<br/>Harvard Berkowitz Fellow<br/></p>
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-          <p class="title is-5"><a href="https://ruthjohnson95.github.io/">Ruth Johnson</a></p>
-          <p class="subtitle is-6">Postdoctoral Fellow<br/>Harvard Berkowitz Fellow<br/></p>
+          <p class="title is-5"><a href="http://shgao.site/">Shanghua Gao</a></p>
+          <p class="subtitle is-6">Postdoctoral Fellow<br/><br/></p>
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+            <img src="/img/wanxiang_shen.png" alt="<a href="https://www.shenwx.com/">Wanxiang Shen</a>" />
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-          <p class="title is-5"><a href="http://shgao.site/">Shanghua Gao</a></p>
+          <p class="title is-5"><a href="https://www.shenwx.com/">Wanxiang Shen</a></p>
           <p class="subtitle is-6">Postdoctoral Fellow<br/><br/></p>
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+            <img src="/img/xiang_lin.png" alt="<a href="https://www.linkedin.com/in/xiang-lin-576222259">Xiang Lin</a>" />
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-          <p class="title is-5"><a href="https://www.shenwx.com/">Wanxiang Shen</a></p>
+          <p class="title is-5"><a href="https://www.linkedin.com/in/xiang-lin-576222259">Xiang Lin</a></p>
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-            <img src="/img/xiang_lin.png" alt="<a href="https://www.linkedin.com/in/xiang-lin-576222259">Xiang Lin</a>" />
+            <img src="/img/xiaorui_su.png" alt="<a href="https://scholar.google.com/citations?hl=zh-CN&user=Awdn73MAAAAJ">Xiaorui Su</a>" />
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-          <p class="title is-5"><a href="https://www.linkedin.com/in/xiang-lin-576222259">Xiang Lin</a></p>
+          <p class="title is-5"><a href="https://scholar.google.com/citations?hl=zh-CN&user=Awdn73MAAAAJ">Xiaorui Su</a></p>
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+            <img src="/img/ying_jin.png" alt="<a href="https://ying531.github.io/">Ying Jin</a>" />
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-          <p class="title is-5"><a href="https://scholar.google.com/citations?hl=zh-CN&user=Awdn73MAAAAJ">Xiaorui Su</a></p>
-          <p class="subtitle is-6">Postdoctoral Fellow<br/><br/></p>
+          <p class="title is-5"><a href="https://ying531.github.io/">Ying Jin</a></p>
+          <p class="subtitle is-6">Postdoctoral Fellow<br/>Harvard Data Science Fellow<br/></p>
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-            <img src="/img/ying_jin.png" alt="<a href="https://ying531.github.io/">Ying Jin</a>" />
+            <img src="/img/kexin_chen.png" alt="<a href="https://scholar.google.com.hk/citations?hl=zh-CN&user=wHMRoIUAAAAJ&view_op=list_works&sortby=pubdate">Kexin Chen</a>" />
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-          <p class="title is-5"><a href="https://ying531.github.io/">Ying Jin</a></p>
-          <p class="subtitle is-6">Postdoctoral Fellow<br/>Harvard Data Science Fellow<br/></p>
+          <p class="title is-5"><a href="https://scholar.google.com.hk/citations?hl=zh-CN&user=wHMRoIUAAAAJ&view_op=list_works&sortby=pubdate">Kexin Chen</a></p>
+          <p class="subtitle is-6">Visiting PhD Student<br/><br/></p>
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-            <img src="/img/alex_verce.png" alt="<a href="https://amva13.github.io//">Alejandro Velez Arce</a>" />
+            <img src="/img/michelle_dai.png" alt="<a href="#">Michelle Dai</a>" />
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-          <p class="title is-5"><a href="https://amva13.github.io//">Alejandro Velez Arce</a></p>
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+            <img src="/img/alex_verce.png" alt="<a href="https://amva13.github.io//">Alejandro Velez Arce</a>" />
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-          <p class="title is-5"><a href="#">Michelle Dai</a></p>
+          <p class="title is-5"><a href="https://amva13.github.io//">Alejandro Velez Arce</a></p>
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+          </figure>
+        </div>
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+        <div class="card-content">
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+          <p class="title is-5"><a href="#">Iñaki Arango</a></p>
+          <p class="subtitle is-6">Undergraduate Researcher<br/>Harvard<br/></p>
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