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Ship cellxgene #227

Merged
merged 40 commits into from
Mar 6, 2024
Merged

Ship cellxgene #227

merged 40 commits into from
Mar 6, 2024

Commits on Feb 27, 2024

  1. simple testing on cellxgene api

    @amva13
    amva13 committed Feb 27, 2024
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Commits on Mar 1, 2024

  1. cellxgene census is a resource

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    amva13 committed Mar 1, 2024
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Commits on Mar 2, 2024

  1. makae census api a resource

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Commits on Mar 4, 2024

  1. mvp cellxgene resource implemented

    @amva13
    amva13 committed Mar 4, 2024
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Commits on Mar 5, 2024

  1. implement memory-efficient retrieval of count matrix and update envir… 

    …onment. Also support AnnData retrieval
    @amva13
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  2. lint all base files

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  3. yapr lint google format on tdc/benchmark_group, chem_utils, generatio… 

    …n, multi_pred
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  4. google lint on resource and single_pred in tdc

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  5. google lint on tdc/test

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  6. google lint on tdc/utils

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  7. google lint tdc base files

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  8. fix mistake in yields.py

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  9. completed google lint. added torch dependencies to conda. tests pass.… 

    … unskipped all but one.
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  10. mend

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  11. mend

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  12. mend

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  13. mend

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  14. add YAPF to GH Action

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  15. remaining lint errors

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  16. simple testing on cellxgene api

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  17. implement memory-efficient retrieval of count matrix and update envir… 

    …onment. Also support AnnData retrieval
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  18. mend

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  19. run conda-tests on all branches

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  20. completed google lint. added torch dependencies to conda. tests pass.… 

    … unskipped all but one.
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  21. mend

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  22. implement memory-efficient retrieval of count matrix and update envir… 

    …onment. Also support AnnData retrieval
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  23. mend

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  24. merge and lint

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  25. decorator for X and feature presence checks

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  26. documentation

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Commits on Mar 6, 2024

  1. ship cellxgene loader

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    amva13 committed Mar 6, 2024
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  2. mend

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  3. mend

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  4. mend

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  5. mend

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  6. circle-ci problems.. should migrate

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  7. mend

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    amva13 committed Mar 6, 2024
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  8. Merge remote-tracking branch 'origin' into avelez-cellxgene-dev

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    amva13 committed Mar 6, 2024
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  9. mend

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  10. mend

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    amva13 committed Mar 6, 2024
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