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New MM::StorageDevice and addition to the MMCore API #535

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New MM::StorageDevice and addition to the MMCore API #535

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1b94904
upgrade to VS 2022, solution filter added for Storage Device development
nenada Mar 28, 2024
23d2bdc
StorageDevice introduced - work in progress
nenada Mar 29, 2024
b616a7c
go2scope device introduced
nenada Apr 3, 2024
35acc6a
Storage instance added and MMCore plumbing
nenada Apr 4, 2024
8d0d52b
storage instance: further work
nenada Apr 5, 2024
f34d40f
Storage API cleanup
nenada Apr 6, 2024
f9c5311
Minimal MMCore interface sketched out
nenada Apr 9, 2024
e72c52f
loadDataset added
nenada Apr 23, 2024
fbe7d7b
vector<int> arguments replaced with vector<long> to help with Swig
nenada Apr 30, 2024
153502e
cleaned up API signatures in MMCore
nenada Apr 30, 2024
b75ea01
acquire zarr linked into the device adapter, other dependencies still…
nenada Aug 9, 2024
e5b1a47
static runtime selected
nenada Aug 16, 2024
b3fb638
Merge branch 'main' of https://github.com/go2scope/mmCoreAndDevicesSD
nenada Aug 16, 2024
fcf103b
implementation of data read functions
nenada Aug 24, 2024
e79e646
storage instance methods populated
nenada Aug 25, 2024
e9fb092
nlohmann json library added
nenada Aug 28, 2024
7388b90
StroageMnager copied from go2scope. Requres extensive refactoring
nenada Aug 28, 2024
2634130
storage manager refactored
nenada Sep 16, 2024
ede3ae0
temporarily commented out zar library
nenada Sep 26, 2024
a3cc067
zarr storage device created and separated from the upcoming tiff4 sto…
nenada Sep 27, 2024
e3d3c0a
API modified to accomodate forwared declaration of pixel type
nenada Sep 28, 2024
7e6ce4d
further integration of zarr
nenada Oct 1, 2024
9ad2115
Merge branch 'main' of https://github.com/go2scope/mmCoreAndDevicesSD
nenada Oct 3, 2024
6f4972a
BigTIFF storage added (branch merged manually)
razrock Oct 10, 2024
075a910
G2STIFF parser added to BigTIFF storage driver
razrock Oct 10, 2024
195e0f9
BigTIFF storage - Add image, set dataset info
razrock Oct 11, 2024
c0e44e6
G2STiff format: Fixes for read & write access on the same file stream
razrock Oct 11, 2024
ca4c0e1
image number initialized in constructor
nenada Oct 14, 2024
353e156
Set device interface version to 71. This will have to be updated on t…
nenada Oct 14, 2024
0e7e1b2
bug fix: MMCore requires explicit declaration of any new device on mu…
nenada Oct 14, 2024
6711230
Storage instance bug fix
nenada Oct 14, 2024
bdbc950
bug fixes in zarr storage
nenada Oct 15, 2024
cdb678b
MMCoreJ wrapper fix for storage API
razrock Oct 15, 2024
3a838a6
MMCore and MMDevice storage API refactored
nenada Oct 15, 2024
475b853
bug fixes and error messages
nenada Oct 16, 2024
7a6f52e
comments and TODO items
nenada Oct 16, 2024
d1ebbf5
BigTIFF storage bug fixes, improved error reporting, file naming fixed
razrock Oct 16, 2024
9f3aa10
bug fix in zarr driver, shape
nenada Oct 16, 2024
2ef1c4e
refactoring at various points in the storage pipeline
nenada Oct 17, 2024
b636463
redundant name removed from the MMCore::load API
nenada Oct 17, 2024
d1d152b
G2SBigTiff format reader fixes
razrock Oct 17, 2024
f662cff
Random access support for G2SBigTiff format
razrock Oct 18, 2024
052e6ba
Go2Scope storage driver - DirectIO device property
razrock Oct 21, 2024
c557f3a
G2S storage driver: Write stream flush cycle property
razrock Oct 23, 2024
5d49b53
C++ G2S Storage tests
razrock Oct 24, 2024
3f9b59e
C++ storage tests: Improved measurement and logging
razrock Oct 24, 2024
a5cd9fc
MMCore java wrapper: Native support for 16-bit (short[]) addImage
razrock Oct 25, 2024
f0ff702
Storage driver / BigTIFF: Axis order inverted (slowest chaning first)
razrock Oct 29, 2024
5d2b839
MMCore java wrapper fix (storage driver getImage)
razrock Oct 29, 2024
52a0c28
Merge branch 'main' of github.com:go2scope/mmCoreAndDevicesSD
nenada Oct 31, 2024
02ff09e
Merge branch 'main' into develop/zarr
nenada Oct 31, 2024
9f9e03e
zarr dimension order corrected
nenada Nov 1, 2024
b0ccfef
MMCore storage api extended to accomodate format discovery
nenada Nov 1, 2024
fcc6e62
buf fixes for zarr writer
nenada Nov 1, 2024
16f4c42
update from lum development - support for chunking
nenada Dec 7, 2024
02645d5
more updates from lum: chunking
nenada Dec 7, 2024
a5799cf
Merge branch 'develop/format' into develop/zarr
nenada Dec 7, 2024
29df05c
reduntant files cleanup
nenada Dec 7, 2024
9e11065
API for storage extended with new functions
nenada Dec 8, 2024
61062ef
cleaned up unused files
nenada Dec 9, 2024
f448c83
reverted to 142 runtime
nenada Dec 11, 2024
2c88b7f
appendImage() added to device api
nenada Dec 11, 2024
79d06e9
bug fixes, missing API implemented
nenada Dec 18, 2024
48533ca
isReadOnly added
nenada Dec 18, 2024
8d5e513
device adapter bug fixes and update to the latest API changes
nenada Dec 18, 2024
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4 changes: 2 additions & 2 deletions DeviceAdapters/89NorthLDI/89North_LDI.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AAAOTF/AAAOTF.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/ABS/ABSCamera.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AOTF/AOTF.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/ASIFW1000/ASIFW1000.vcxproj
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6 changes: 3 additions & 3 deletions DeviceAdapters/ASIStage/ASIStage.vcxproj
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6 changes: 3 additions & 3 deletions DeviceAdapters/ASITiger/ASITiger.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/ASIWPTR/ASIwptr.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AgilentLaserCombiner/AgilentLaserCombiner.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Aladdin/Aladdin.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AlliedVisionCamera/AlliedVisionCamera.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AmScope/AmScope.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Andor/Andor.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AndorLaserCombiner/AndorLaserCombiner.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AndorSDK3/AndorSDK3.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/AndorShamrock/AndorShamrock.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Aquinas/Aquinas.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Arduino/Arduino.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Arduino32bitBoards/Arduino32bitBoards.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Atik/AtikCamera.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/BDPathway/BDPathway.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/BH_DCC_DCU/BH_DCC_DCU.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/Basler/BaslerPylon.vcxproj
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4 changes: 2 additions & 2 deletions DeviceAdapters/BaumerOptronic/BaumerOptronic.vcxproj
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