made a few dplyr chapter edits

mgimond · Feb 20, 2024 · eda1988 · eda1988
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diff --git a/docs/dplyr.html b/docs/dplyr.html
diff --git a/docs/ggplot2.html b/docs/ggplot2.html
@@ -336,7 +336,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>
@@ -498,28 +498,28 @@ <h1 class="title"><span class="chapter-number">15</span>&nbsp; <span class="chap
 <table data-quarto-disable-processing="true" class="table" style="width: auto !important; ">
  <thead>
   <tr>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> dplyr </th>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> ggplot2 </th>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> forcats </th>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
@@ -530,28 +530,28 @@ <h1 class="title"><span class="chapter-number">15</span>&nbsp; <span class="chap
  </thead>
 <tbody>
   <tr>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> 1.1.4 </td>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> 3.4.4 </td>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> 1.0.0 </td>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;

diff --git a/docs/joins.html b/docs/joins.html
@@ -336,7 +336,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>
@@ -468,7 +468,7 @@ <h1 class="title"><span class="chapter-number">12</span>&nbsp; <span class="chap
 <table data-quarto-disable-processing="true" class="table" style="width: auto !important; ">
  <thead>
   <tr>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
@@ -479,7 +479,7 @@ <h1 class="title"><span class="chapter-number">12</span>&nbsp; <span class="chap
  </thead>
 <tbody>
   <tr>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;

diff --git a/docs/lattice_plot.html b/docs/lattice_plot.html
@@ -336,7 +336,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>
@@ -471,7 +471,7 @@ <h1 class="title"><span class="chapter-number">14</span>&nbsp; <span class="chap
 <table data-quarto-disable-processing="true" class="table" style="width: auto !important; ">
  <thead>
   <tr>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
@@ -482,7 +482,7 @@ <h1 class="title"><span class="chapter-number">14</span>&nbsp; <span class="chap
  </thead>
 <tbody>
   <tr>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;

diff --git a/docs/letter_values.html b/docs/letter_values.html
@@ -64,7 +64,7 @@
 <script src="site_libs/quarto-search/fuse.min.js"></script>
 <script src="site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="./">
-<link href="./robustness.html" rel="next">
+<link href="./case_study.html" rel="next">
 <link href="./re_express.html" rel="prev">
 <script src="site_libs/quarto-html/quarto.js"></script>
 <script src="site_libs/quarto-html/popper.min.js"></script>
@@ -338,7 +338,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>
@@ -904,7 +904,7 @@ <h2 data-number="22.4" class="anchored" data-anchor-id="interpreting-the-letter-
       </a>          
   </div>
   <div class="nav-page nav-page-next">
-      <a href="./robustness.html" class="pagination-link">
+      <a href="./case_study.html" class="pagination-link">
         <span class="nav-page-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span> <i class="bi bi-arrow-right-short"></i>
       </a>
   </div>

diff --git a/docs/re_express.html b/docs/re_express.html
@@ -338,7 +338,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>

diff --git a/docs/read_write_files.html b/docs/read_write_files.html
@@ -336,7 +336,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>
@@ -476,14 +476,14 @@ <h1 class="title"><span class="chapter-number">4</span>&nbsp; <span class="chapt
 <table data-quarto-disable-processing="true" class="table" style="width: auto !important; ">
  <thead>
   <tr>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> readxl </th>
-   <th style="text-align:left;color: rgba(85, 85, 85, 255) !important;background-color: rgba(221, 221, 221, 255) !important;text-align: center;border: 1px solid white !important;
+   <th style="text-align:left;color: #555555 !important;background-color: #dddddd !important;text-align: center;border: 1px solid white !important;
              font-family: 'Source Code Pro', 'Open Sans';
              padding:1px !important;
              padding-left:4px !important;
@@ -494,14 +494,14 @@ <h1 class="title"><span class="chapter-number">4</span>&nbsp; <span class="chapt
  </thead>
 <tbody>
   <tr>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;
              padding-right:4px !important;
              font-size: 0.8em;
              border-radius: 5px;"> 1.4.3 </td>
-   <td style="text-align:left;color: darkred !important;background-color: rgba(250, 232, 232, 255) !important;text-align: center;border: 1px solid white;
+   <td style="text-align:left;color: darkred !important;background-color: #FAE8E8 !important;text-align: center;border: 1px solid white;
              font-family: 'Open Sans', Arial;
              padding:1px !important;
              padding-left:4px !important;
@@ -621,11 +621,11 @@ <h2 data-number="4.3" class="anchored" data-anchor-id="saving-an-r-session"><spa
 <p>You can save an entire R session (which includes <em>all</em> data objects) using the <code>save</code> function.</p>
 <p>To save <em>all</em> objects, set the <code>list=</code> parameter to <code>ls()</code>:</p>
 <div class="cell" data-hash="read_write_files_cache/html/unnamed-chunk-18_05b0670a21f6ce022fff88b0de0daf66">
-<div class="sourceCode cell-code" id="cb16"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a><span class="fu">save</span>(<span class="at">list =</span> <span class="fu">ls</span>(), <span class="at">file =</span> <span class="st">"ACS_all.Rdata"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<div class="sourceCode cell-code" id="cb16"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a><span class="fu">save</span>(<span class="at">list=</span><span class="fu">ls</span>(), <span class="at">file =</span> <span class="st">"ACS_all.Rdata"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>To save only two R session objects–<code>dat</code> and <code>dat.sub</code>–to a file, pass the list of objects to the <code>list=</code> parameter:</p>
 <div class="cell" data-hash="read_write_files_cache/html/unnamed-chunk-19_c3376ebff55bf0d71f6e53c3520f62c4">
-<div class="sourceCode cell-code" id="cb17"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb17-1"><a href="#cb17-1" aria-hidden="true" tabindex="-1"></a><span class="fu">save</span>(<span class="at">list =</span> <span class="fu">c</span>(dat, dat.sub), <span class="at">file =</span> <span class="st">"ACS_subset.Rdata"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<div class="sourceCode cell-code" id="cb17"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb17-1"><a href="#cb17-1" aria-hidden="true" tabindex="-1"></a><span class="fu">save</span>(<span class="at">list=</span><span class="fu">c</span>(dat, dat.sub), <span class="at">file =</span> <span class="st">"ACS_subset.Rdata"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 </section>
 <section id="loading-an-r-session" class="level2" data-number="4.4">

diff --git a/docs/rf.html b/docs/rf.html
@@ -336,7 +336,7 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="./robustness.html" class="sidebar-item-text sidebar-link">
+  <a href="./case_study.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">23</span>&nbsp; <span class="chapter-title">A working example: t-tests and re-expression</span></span></a>
   </div>
 </li>