2025-Borisenko_et_al_Halisarca_genome_assembly_and_analysis
This repository contains files related to the article "First draft genome assembly of sponge Halisarca dujardinii reveals key components of basement membrane and broad repertoire of aggregation factors"
- hdu.gene_models.gff3 - Gene models in the genome predicted by the method described in the paper. Gene structure was predicted using Augustus and Genemark-ES, and then combined with additional evidence (PASA generated consensus transcript assemblies and alignment of UniProtKB/Swiss-Prot proteomes to the genome) using EVM.
- hdu.proteins.fa - protein sequences corresponding to the coding regions of the genome.
- Trinotate_report.tsv - Trinotate transcriptome analysis report.
- pipeline_genome.sh - parameters for launching programs for processing, assembling and polishing the genome.