0.7.6

NEWS.md

@@ -1,4 +1,27 @@
-__Please see the latest release__: [v0.7.4](https://github.com/metrumresearchgroup/mrgsolve/releases/tag/v0.7.4)
+
+
+__Please see the latest release__: [v0.7.6](https://github.com/metrumresearchgroup/mrgsolve/releases/tag/v0.7.6)
+
+# Since 0.7.5
+
+## Features
+
+- Added annotated code blocks for `$PARAM`, `$FIXED`, `$THETA`, `$CMT`, `$INIT`, and `$VCMT`. (../../issues/107)
+- `mrgsolve:::house()` model re-coded as an annotated model.
+- Re-implemented `$ENV` to allow users to create `R` objects that can be used at certain points
+when parsing the model. (../../issues/115)
+- Added `>>` signifier to code blocks that allow options; `>>` at the beginning of the line indicates that the `name=value` statements that follow are to be parsed as block options.
+- Added `object` argument for the following blocks: `$PARAM`, `$OMEGA`, `$SIGMA`, `$FIXED`, `$CMT`.  When `object` is set to a character string naming an object in `$ENV`, that object will be used to form the output from the block.
+
+## Bugs fixed
+
+- Fixed a bug which caused simulation run to hang when implementing a dose with a __very__ small lag time. (../../issues/109)
+- Fixed a bug where `valid.numericlist` wasn't returning `FALSE` for improperly-formed objects.
+
+## Under the hood
+
+- Now using an `environment` to collect objects when parsing the model specification file.
+- Some small changes to `C++` code that calculates compartment amounts for closed form one- and two-compartment models resulting in faster simulation runs.
 
 # Since 0.7.4
 - The `modmrg` package was discontinued.  All of the pre-coded models are now available in `mrgsolve`.  Simply call `mread` with the model stem (e.g. `pk1cmt`, `irm3`, etc ...) and call `modlib()` as the `project` argument.  For example: `mod <- mread("emax", modlib())` will compile the `emax` model and return the model object.

README.Rmd

@@ -20,7 +20,7 @@ opts_chunk$set(comment='.', fig.align="center", fig.path="img/README-")
 
 # Resources
 
-  * [Latest release: 0.7.5](https://github.com/metrumresearchgroup/mrgsolve/releases)
+  * [Latest release: 0.7.6](https://github.com/metrumresearchgroup/mrgsolve/releases)
   * [Get started with `mrgsolve`](https://github.com/metrumresearchgroup/mrgsolve/wiki/howdoi)
   * [User Guide](https://mrgsolve.github.io/user_guide)
   * [Installation guide](https://github.com/metrumresearchgroup/mrgsolve/wiki/mrgsolve-installation)
@@ -41,10 +41,16 @@ opts_chunk$set(comment='.', fig.align="center", fig.path="img/README-")
 3 primary options exist to install `mrgsolve`:
 
 * Installation from source the source tar.gz file and all dependencies, [as documented in the wiki](https://github.com/metrumresearchgroup/mrgsolve/wiki/mrgsolve-Installation)
+    * The development version from github via:
+
+```{r,eval=FALSE}
+  devtools::install_github("metrumresearchgroup/mrgsolve", subdir="rdev")
+```
+
   * Latest stable version directly from github via:
 
 ```{r,eval=FALSE}
-  devtools::install_github("metrumresearchgroup/[email protected].5", subdir="rdev")
+  devtools::install_github("metrumresearchgroup/[email protected].6", subdir="rdev")
 ```
 
   * The latest stable release can be installed with `install.packages` like this:
@@ -55,11 +61,7 @@ opts_chunk$set(comment='.', fig.align="center", fig.path="img/README-")
 ```
 
 
-  * The development version from github via:
 
-```{r,eval=FALSE}
-  devtools::install_github("metrumresearchgroup/mrgsolve", subdir="rdev")
-```
 
 Note that installation from `github` will automatically install all dependencies, such `RcppArmadillo`.
 

README.md

@@ -3,7 +3,7 @@
 Resources
 =========
 
--   [Latest release: 0.7.5](https://github.com/metrumresearchgroup/mrgsolve/releases)
+-   [Latest release: 0.7.6](https://github.com/metrumresearchgroup/mrgsolve/releases)
 -   [Get started with `mrgsolve`](https://github.com/metrumresearchgroup/mrgsolve/wiki/howdoi)
 -   [User Guide](https://mrgsolve.github.io/user_guide)
 -   [Installation guide](https://github.com/metrumresearchgroup/mrgsolve/wiki/mrgsolve-installation)
@@ -24,10 +24,16 @@ Installation
 3 primary options exist to install `mrgsolve`:
 
 -   Installation from source the source tar.gz file and all dependencies, [as documented in the wiki](https://github.com/metrumresearchgroup/mrgsolve/wiki/mrgsolve-Installation)
+    -   The development version from github via:
+
+``` r
+  devtools::install_github("metrumresearchgroup/mrgsolve", subdir="rdev")
+```
+
 -   Latest stable version directly from github via:
 
 ``` r
-  devtools::install_github("metrumresearchgroup/[email protected].5", subdir="rdev")
+  devtools::install_github("metrumresearchgroup/[email protected].6", subdir="rdev")
 ```
 
 -   The latest stable release can be installed with `install.packages` like this:
@@ -38,12 +44,6 @@ Installation
                    type="source")
 ```
 
--   The development version from github via:
-
-``` r
-  devtools::install_github("metrumresearchgroup/mrgsolve", subdir="rdev")
-```
-
 Note that installation from `github` will automatically install all dependencies, such `RcppArmadillo`.
 
 About

rdev/DESCRIPTION

@@ -1,6 +1,6 @@
 Package: mrgsolve
 Type: Package
-Version: 0.7.5.9002
+Version: 0.7.6
 Title: Simulation from ODE-Based Population PK/PD and Systems Pharmacology
     Models
 Author: Kyle T. Baron [cre,aut,cph], Alan C. Hindmarsh [ctb], Linda R. Petzold