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Add configuration for Docker #20

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Add configuration for Docker #20

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LachlanStuart
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See the usage instructions in README.md.

The way this handles configuration is currently pretty bad. For self-contained setups it uses pre-made configuration files, and for development setups it uses whatever configuration you have in your external sm repositories (note that mol-db uses dev.ini instead of local.ini inside Docker, as local.ini doesn't support setting a postgres password).

The ideal state is that this would grab the latest templates from each repository and populate them from a combination of the vbox/group_vars/all.yml file from this repository, and a set of overrides specific to Docker. That won't be included in this PR though.

…rvices to start. Only update conda env if needed.
Automate more of the development environment setup
Only expose necessary ports
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