Update README.md #352
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| name: testing | |
| on: [push, pull_request] | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: [ubuntu-22.04, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ConorMacBride/install-package@v1 | |
| with: | |
| brew: bowtie2 freebayes mafft | |
| apt: bowtie2 freebayes mafft | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| - name: Install poetry | |
| uses: abatilo/actions-poetry@v2 | |
| - name: Install the project dependencies | |
| run: poetry install --only test -C meteor | |
| - name: Run the automated tests (for example) | |
| run: poetry run -C meteor pytest --cov=meteor --cov-report xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: metagenopolis/meteor |