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fplazaonate committed Jul 25, 2024
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# ESKRIM: EStimate with K-mers the RIchness in a Microbiome 🤺 #

[![install with conda](https://img.shields.io/conda/vn/bioconda/eskrim?color=green&label=bioconda%2Feskrim&logo=anaconda)](https://anaconda.org/bioconda/eskrim)
[![PyPI](https://img.shields.io/pypi/v/eskrim?label=pypi%20package)](https://pypi.org/project/eskrim/)

ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

## Installation via pip ##
## Installation
ESKRIM is available on bioconda:
```
conda create --name eskrim_env -c conda-forge -c bioconda eskrim
conda activate eskrim_env
```

Alternatively, you can use pip with python 3.12 or later:
```
pip install eskrim
```
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