PASCAL-S dataset uses ScanpathFixations

also the test got recfactored into its own file

Signed-off-by: Matthias Kümmerer <[email protected]>

pysaliency/external_datasets/pascal_s.py

@@ -1,19 +1,18 @@
-from __future__ import absolute_import, print_function, division
+from __future__ import absolute_import, division, print_function
 
-import zipfile
 import os
+import zipfile
 
-import requests
 import numpy as np
+import requests
 
-from ..datasets import FixationTrains
+from ..datasets import ScanpathFixations, Scanpaths
 from ..utils import (
     TemporaryDirectory,
-    download_and_check,
     atomic_directory_setup,
+    download_and_check,
 )
-
-from .utils import create_stimuli, _load
+from .utils import _load, create_stimuli
 
 
 def get_PASCAL_S(location=None):
@@ -100,7 +99,13 @@ def get_PASCAL_S(location=None):
                     train_ns.append(n)
                     train_subjects.append(subject - 1)  # subjects are 1-indexed in matlab
 
-        fixations = FixationTrains.from_fixation_trains(train_xs, train_ys, train_ts, train_ns, train_subjects)
+        fixations = ScanpathFixations(Scanpaths(
+            xs=train_xs,
+            ys=train_ys,
+            ts=train_ts,
+            n=train_ns,
+            subject=train_subjects,
+        ))
 
         if location:
             stimuli.to_hdf5(os.path.join(location, 'stimuli.hdf5'))

tests/external_datasets/test_PASCAL_S.py

@@ -0,0 +1,52 @@
+import numpy as np
+import pytest
+from pytest import approx
+from scipy.stats import kurtosis, skew
+
+import pysaliency
+import pysaliency.external_datasets
+from tests.test_external_datasets import _location, entropy
+
+
+@pytest.mark.slow
+@pytest.mark.download
+def test_PASCAL_S(location):
+    real_location = _location(location)
+
+    stimuli, fixations = pysaliency.external_datasets.get_PASCAL_S(location=real_location)
+    if location is None:
+        assert isinstance(stimuli, pysaliency.Stimuli)
+        assert not isinstance(stimuli, pysaliency.FileStimuli)
+    else:
+        assert isinstance(stimuli, pysaliency.FileStimuli)
+        assert location.join('PASCAL-S/stimuli.hdf5').check()
+        assert location.join('PASCAL-S/fixations.hdf5').check()
+
+    assert len(stimuli.stimuli) == 850
+
+    assert len(fixations.x) == 40314
+
+    assert np.mean(fixations.x) == approx(240.72756362553952)
+    assert np.mean(fixations.y) == approx(194.85756809048965)
+    assert np.mean(fixations.t) == approx(2.7856823932132757)
+    assert np.mean(fixations.scanpath_history_length) == approx(2.7856823932132757)
+
+    assert np.std(fixations.x) == approx(79.57401169717699)
+    assert np.std(fixations.y) == approx(65.21296890260112)
+    assert np.std(fixations.t) == approx(2.1191752645988675)
+    assert np.std(fixations.scanpath_history_length) == approx(2.1191752645988675)
+
+    assert kurtosis(fixations.x) == approx(0.0009226786675387011)
+    assert kurtosis(fixations.y) == approx(1.1907544566979986)
+    assert kurtosis(fixations.t) == approx(-0.540943536495714)
+    assert kurtosis(fixations.scanpath_history_length) == approx(-0.540943536495714)
+
+    assert skew(fixations.x) == approx(0.2112334873314548)
+    assert skew(fixations.y) == approx(0.7208733522533084)
+    assert skew(fixations.t) == approx(0.4800678710338635)
+    assert skew(fixations.scanpath_history_length) == approx(0.4800678710338635)
+
+    assert entropy(fixations.n) == approx(9.711222735065062)
+    assert (fixations.n == 0).sum() == 35
+
+    assert len(fixations) == len(pysaliency.datasets.remove_out_of_stimulus_fixations(stimuli, fixations))

tests/test_external_datasets.py

@@ -284,50 +284,6 @@ def test_mit1003_onesize(location, matlab):
     assert (fixations.n == 0).sum() == 121
 
 
-@pytest.mark.slow
-@pytest.mark.download
-def test_PASCAL_S(location):
-    real_location = _location(location)
-
-    stimuli, fixations = pysaliency.external_datasets.get_PASCAL_S(location=real_location)
-    if location is None:
-        assert isinstance(stimuli, pysaliency.Stimuli)
-        assert not isinstance(stimuli, pysaliency.FileStimuli)
-    else:
-        assert isinstance(stimuli, pysaliency.FileStimuli)
-        assert location.join('PASCAL-S/stimuli.hdf5').check()
-        assert location.join('PASCAL-S/fixations.hdf5').check()
-
-    assert len(stimuli.stimuli) == 850
-
-    assert len(fixations.x) == 40314
-
-    assert np.mean(fixations.x) == approx(240.72756362553952)
-    assert np.mean(fixations.y) == approx(194.85756809048965)
-    assert np.mean(fixations.t) == approx(2.7856823932132757)
-    assert np.mean(fixations.scanpath_history_length) == approx(2.7856823932132757)
-
-    assert np.std(fixations.x) == approx(79.57401169717699)
-    assert np.std(fixations.y) == approx(65.21296890260112)
-    assert np.std(fixations.t) == approx(2.1191752645988675)
-    assert np.std(fixations.scanpath_history_length) == approx(2.1191752645988675)
-
-    assert kurtosis(fixations.x) == approx(0.0009226786675387011)
-    assert kurtosis(fixations.y) == approx(1.1907544566979986)
-    assert kurtosis(fixations.t) == approx(-0.540943536495714)
-    assert kurtosis(fixations.scanpath_history_length) == approx(-0.540943536495714)
-
-    assert skew(fixations.x) == approx(0.2112334873314548)
-    assert skew(fixations.y) == approx(0.7208733522533084)
-    assert skew(fixations.t) == approx(0.4800678710338635)
-    assert skew(fixations.scanpath_history_length) == approx(0.4800678710338635)
-
-    assert entropy(fixations.n) == approx(9.711222735065062)
-    assert (fixations.n == 0).sum() == 35
-
-    assert len(fixations) == len(pysaliency.datasets.remove_out_of_stimulus_fixations(stimuli, fixations))
-
-
 @pytest.mark.slow
 @pytest.mark.download
 def test_DUT_OMRON(location, tmpdir):