try fixing failing github test #189
Workflow file for this run
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| name: Tests | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: | |
| - "3.7" | |
| - "3.8" | |
| - "3.9" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #activate-environment: anaconda-client-env | |
| #environment-file: etc/example-environment.yml | |
| #condarc-file: etc/example-condarc.yml | |
| #auto-activate-base: false | |
| channels: conda-forge | |
| - name: Conda info | |
| # the shell setting is necessary for loading profile etc which activates the conda environment | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Conda list | |
| shell: bash -el {0} | |
| run: conda list | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Add conda to system path | |
| # run: | | |
| # # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| # echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install dependencies | |
| shell: bash -el {0} | |
| run: | | |
| # conda env update --file environment.yml --name base | |
| # conda config --add channels conda-forge | |
| conda install \ | |
| boltons \ | |
| cython \ | |
| deprecation \ | |
| dill \ | |
| diskcache \ | |
| h5py \ | |
| imageio \ | |
| natsort \ | |
| numba \ | |
| numpy \ | |
| numpydoc \ | |
| pandas \ | |
| piexif \ | |
| pillow \ | |
| pip \ | |
| pkg-config \ | |
| pytorch \ | |
| requests \ | |
| schema \ | |
| scikit-learn \ | |
| scipy \ | |
| setuptools \ | |
| sphinx \ | |
| torchvision \ | |
| tqdm | |
| #pip install h5py # https://github.com/h5py/h5py/issues/1880 | |
| # - name: Lint with flake8 | |
| # run: | | |
| # conda install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| shell: bash -el {0} | |
| run: | | |
| echo "which conda" | |
| type conda | |
| conda install pytest hypothesis | |
| echo "which python" | |
| type python | |
| echo "Running setup py" | |
| python setup.py build_ext --inplace | |
| python -m pytest --nomatlab --notheano tests | |
| - name: test build and install | |
| shell: bash -el {0} | |
| run: | | |
| conda list | |
| echo "which python" | |
| type python | |
| echo "starting build" | |
| python setup.py sdist | |
| pip install dist/*.tar.gz | |
| mkdir tmp && cd tmp && python -c "import pysaliency" |