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feat: moved demo files in demo_exps folder
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| expname=Demo Experiment #1 | ||
| comments=Demo Experiment #1 | ||
| organism=mmu | ||
| geneIdType=ensembl | ||
| gene_id_column=1 | ||
| gene_dev_column=2 | ||
| gene_pvalue_column=3 | ||
| protIdType=symbol | ||
| prot_id_column=1 | ||
| prot_dev_column=2 | ||
| prot_pvalue_column=3 | ||
| urnaIdType=mirbase | ||
| urna_id_column=undefined | ||
| urna_dev_column=undefined | ||
| urna_pvalue_column=undefined | ||
| methIdType=ensembl | ||
| meth_id_column=1 | ||
| meth_dev_column=2 | ||
| meth_pvalue_column=3 | ||
| metaIdType=name | ||
| meta_id_column=1 | ||
| meta_dev_column=2 | ||
| meta_pvalue_column=3 | ||
| chromaIdType= | ||
| chroma_id_column=undefined | ||
| chroma_dev_column=undefined | ||
| chroma_pvalue_column=undefined |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,72 @@ | ||
| statistic_select=Nothing | ||
| maps_db_select=kegg | ||
| FETPooling=0 | ||
| FETIntersect=0 | ||
| enablegene=1 | ||
| geneLeftEffectSizeCheck=0 | ||
| geneRightEffectSizeCheck=1 | ||
| genepValCheck=0 | ||
| geneIdOnlyCheck=1 | ||
| genepValThreshold=0.05 | ||
| geneLeftThreshold=-0.5 | ||
| geneRightThreshold=0.5 | ||
| geneFETEnabled= | ||
| enabletfs_gene=0 | ||
| nodeg_select_tf_gene=0 | ||
| enabletfsIdOnly_gene=1 | ||
| tfsNoDEFromIdOnlyCheck_gene=1 | ||
| enableprot=0 | ||
| protLeftEffectSizeCheck=0 | ||
| protRightEffectSizeCheck=0 | ||
| protpValCheck=0 | ||
| protIdOnlyCheck=0 | ||
| protpValThreshold=0.05 | ||
| protLeftThreshold=-0.5 | ||
| protRightThreshold=0.5 | ||
| protFETEnabled= | ||
| enabletfs_prot=0 | ||
| nodeg_select_tf_prot=0 | ||
| enabletfsIdOnly_prot=1 | ||
| tfsNoDEFromIdOnlyCheck_prot=1 | ||
| enablemeta=0 | ||
| metaLeftEffectSizeCheck=0 | ||
| metaRightEffectSizeCheck=1 | ||
| metapValCheck=0 | ||
| metaIdOnlyCheck=0 | ||
| metapValThreshold=0.05 | ||
| metaLeftThreshold=-0.5 | ||
| metaRightThreshold=0.5 | ||
| metaFETEnabled= | ||
| enablemeth=0 | ||
| methLeftEffectSizeCheck=0 | ||
| methRightEffectSizeCheck=0 | ||
| methpValCheck=0 | ||
| methIdOnlyCheck=0 | ||
| methpValThreshold=0.05 | ||
| methLeftThreshold=-0.5 | ||
| methRightThreshold=0.5 | ||
| methFETEnabled= | ||
| nodeg_select_meth=0 | ||
| methNoDEFromIdOnlyCheck=0 | ||
| enableurna=0 | ||
| urnaLeftEffectSizeCheck=0 | ||
| urnaRightEffectSizeCheck=0 | ||
| urnapValCheck=0 | ||
| urnaIdOnlyCheck=0 | ||
| urnapValThreshold= | ||
| urnaLeftThreshold= | ||
| urnaRightThreshold= | ||
| urnaFETEnabled= | ||
| nodeg_select_urna=0 | ||
| urnaNoDEFromIdOnlyCheck=0 | ||
| enablechroma=0 | ||
| chromaLeftEffectSizeCheck=0 | ||
| chromaRightEffectSizeCheck=0 | ||
| chromapValCheck=0 | ||
| chromaIdOnlyCheck=0 | ||
| chromapValThreshold= | ||
| chromaLeftThreshold= | ||
| chromaRightThreshold= | ||
| chromaFETEnabled= | ||
| nodeg_select_chroma=0 | ||
| chromaNoDEFromIdOnlyCheck=0 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| GENE COR PVAL | ||
| Pyruvic acid -0.703172747058158 0.119083434109548 | ||
| Succinic acid -0.381511734318595 0.4554971445471 | ||
| Glyceric acid -0.743360229304827 0.0903443005306446 | ||
| Fumaric acid -0.261503150997803 0.616686575903169 | ||
| Malic acid -0.252942893088931 0.62867731706973 | ||
| Cysteine -0.624207690429116 0.185295121238251 | ||
| Alpha-ketoglutaric acid -0.347623390682541 0.499568670644958 | ||
| Phosphoethanolamine -0.230951193159914 0.65973250001278 | ||
| Glyceric acid 3-phosphate -0.615500005522929 0.193338081791568 | ||
| Citric acid -0.324109139475632 0.530859594114546 | ||
| Glucose -0.714692940024552 0.110488163466325 | ||
| Mannitol -0.725282508254757 0.102838127025617 | ||
| Myo-inositol -0.627609534968036 0.182191427396522 | ||
| Glucose-6-phosphate -0.124589283548079 0.814083042605399 | ||
| Adenosine 0.447896617249038 0.373081653310748 | ||
| Lactic acid -0.408619426768716 0.421184419170188 | ||
| Thymine -0.00661876235719781 0.990072001441624 | ||
| Cytosine 0.572362994268179 0.235208394550837 | ||
| Ribose-5-phosphate -0.33823453813514 0.511995648554932 | ||
| Fructose -0.537217175687404 0.271695291069349 | ||
| Guanine 0.122140458590184 0.81770037560493 | ||
| Cholesterol -0.144054247728066 0.785413308364963 | ||
| Alanine -0.297511849627882 0.566899103457528 | ||
| Valine -0.589894158056995 0.217793007457602 | ||
| Leucine -0.617629534264312 0.191358107170641 | ||
| Isoleucine -0.618013552381557 0.191001951567585 | ||
| Proline -0.405935754497502 0.424542193809778 | ||
| Serine -0.280266345134249 0.590607834290549 | ||
| Threonine -0.453907228536034 0.365898812532006 | ||
| Glutamic acid -0.336511292535016 0.514286305343066 | ||
| Phenylalanine -0.586030222096086 0.221585262879102 | ||
| Asparagine -0.463275887378719 0.35480135785572 | ||
| Glutamine -0.532602778376056 0.276636407612813 | ||
| Lysine -0.549872074817646 0.258321355221994 | ||
| Tyrosine -0.581044424525494 0.226517329412616 | ||
| Tryptophan -0.47271429677118 0.343744641098933 | ||
| Glycine -0.245158892266956 0.63962903964224 | ||
| Methionine -0.575787560850665 0.231764462395053 | ||
| beta-alanine -0.0666444414537416 0.90018133784884 | ||
| Pipecolic acid -0.550890821712238 0.257256132826774 | ||
| L-histidine -0.325217684038727 0.529372048862795 | ||
| L-4-hydroxyproline -0.511071800789603 0.300136841308332 | ||
| taurine -0.253037332705029 0.628544724415077 | ||
| glycylglycine -0.437577852076567 0.385525695111427 | ||
| L-arginine -0.650630048649426 0.161767107519756 | ||
| L-homoserine -0.347881085541533 0.499228873543411 | ||
| L-aspartic acid -0.336049444807701 0.514900735202199 | ||
| ethanolamine -0.239370180135903 0.647802456037273 | ||
| L-methionine.sulfoxide -0.534544600321165 0.274552933240985 | ||
| gamma-aminobutyric acid -0.170440121464583 0.746815446506503 | ||
| L-2-aminoadipic acid -0.400116603171008 0.431853088163102 | ||
| L-alpha-aminobutyric acid -0.591025066075938 0.2166880695992 | ||
| Ornithine 0.0751486811169069 0.88748917281014 | ||
| X5-hydroxy-L-tryptophan 0.177461953057593 0.73660145241178 | ||
| putrescine -0.182913409305739 0.728689781845614 | ||
| methyldopa -0.224518101763631 0.66888164402752 | ||
| Spermidine -0.244020529841993 0.641234430788284 | ||
| Spermine -0.225428980121505 0.667584480143272 |
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