Setting up the Synchronizers
When you start MobileOrg for the first time you will be presented with the new setup wizard
From here you can select where you would like to synchronize your org files from.
Assuming you use a mode other than Capture Only you will need to configure org-mode to push your files to the location that they will be synchronized from. Read the following section in the org-mode manual for details:
http://orgmode.org/manual/MobileOrg.html#MobileOrg
When notes are captured in MobileOrg, or when edits are made they will be stored in a file called mobileorg.org which org-mode knows how to parse.
Select the "WebDAV" option from the main wizard screen and you will be presented with the webdav configuration screen
Select the "SSH" option from the main wizard
Select the "SD card" option from the main wizard
Click the directory to enter that part of the directory tree. Once you find the folder that contains your index.org file...
Place a checkmark by it and select "Done"
Select the "Capture only" option from the main wizard
No further configuration is necessary for the capture only synchronizer