Skip to content
View martinschorb's full-sized avatar
  • Germany

Block or report martinschorb

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
martinschorb/README.md

Hi there 👋

I started as a scientist but pretty soon realized that creating software to help others achieve their research goals is my main motivation.

From simple data analysis (geometrical relations) and image processing scripts, this lead me to develop a Python package for guiding Transmission EM image acquisition based on image features. I always like to make powerful computational tools available to end users, so I developed some handy tools for accessing a compute cluster.

My most recent and biggest project so far is a dash-based WebUI for running an alignment pipeline for large volume image data on HPC hardware.

Pinned Loading

  1. volumealign volumealign Public

    WebUI for the Render Alignment Pipeline on the HPC cluster

    Python

  2. dask/dask-image dask/dask-image Public

    Distributed image processing

    Python 210 47

  3. mobie/mobie-napari-bridge mobie/mobie-napari-bridge Public

    A napari plugin to interact with MoBIE projects

    Python 1

  4. mobie/mobie-utils-python mobie/mobie-utils-python Public

    Python tools for MoBIE

    Python 9 5

  5. pyem pyem Public

    Python package to interact with SerialEM to automate Transmission Electron Microscopy

    Python

  6. cluster_tools cluster_tools Public

    Forked from constantinpape/cluster_tools

    Distributed segmentation for bio-image-analysis

    Python