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First draft of a ProcessorPipeline#552

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pckroon wants to merge 6 commits intomastermarrink-lab/vermouth-martinize:masterfrom pipelinemarrink-lab/vermouth-martinize:pipelineCopy head branch name to clipboard

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Commits on May 7, 2024

• First draft of a ProcessorPipeline

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Commits on May 8, 2024

• Change all molecule changing logic in bin/martinize2 to Processors

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• Remove more logic from bin/martinize2, some cleanup

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• Make the rubber band requirement for elnedyn part of the FF variables

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• More cleanup of bin/martinize2

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• Restore secstruct string in itp files

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