Skip to content
View markziemann's full-sized avatar
41 followers · 36 following

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Block or report markziemann

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
markziemann/README.md

Hi there 👋

I am head of Bioinformatics at Burnet Institute, Australia. My group provides bioinformatics support to other researchers at Burnet, and we have our own independent research portfolio. Our group is focused on building data resources and software tools to accelerate biomedical discovery. We collaborate closely with clinicians and biologists to get the most out of their 'omics experiments. Our lab is committed to reproducibility, open science, and diversity.

I code mostly in R and bash. I'm looking to learn more about machine learning, web design and other languages used for bioinformatics including python.

Topic areas of interest:

  • Transcriptome analysis

  • Multi-omics/epigenomics

  • Enrichment analysis

  • Scientific rigour

List of scientific publications: Google Scholar and ORCID

Contact me:

  • twitter: @mdziemann

  • email: mark.ziemann αt gmail.com

Pronouns: he/him

Pinned Loading

  1. dee2 dee2 Public

    Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

    Shell 39 7

  2. mitch mitch Public

    An R package for multi-dimensional pathway enrichment analysis

    R 16 4

  3. getDEE2 getDEE2 Public

    Programmatic access to the DEE2 RNA expression dataset.

    R 4

  4. gmea gmea Public

    Gene Methylation Enrichment Analysis

    R 3