Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
marksorel8 authored Sep 18, 2020
1 parent a9f4bee commit cee1b7a
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,10 +1,11 @@
# Chinook-pinniped

This repository contains code and data used in the manuscript *Estimating population-specific predation effects on Chinook salmon via data integration* by Mark H. Sorel, Richard W. Zabel, Devin S. Johnson, A. MIchelle Wargo Rub, and Sarah J. Converse, which has been provisionally accepted for publication in the Journal of Applied Ecology.
This repository contains code and data used in the manuscript *Estimating population-specific predation effects on Chinook salmon via data integration* by Mark H. Sorel, Richard W. Zabel, Devin S. Johnson, A. Michelle Wargo Rub, and Sarah J. Converse, which has been provisionally accepted for publication in the Journal of Applied Ecology.

The main script for the analysis is `Chinook_sea_lion_mortality_analysis.R`. This script conducts the ananlysis but sources several other scripts contained within the "src" folder. Several packages are required to run this script, including "TMB" (Template Model builder), which requires RTools. [Download instruction here](https://github.com/kaskr/adcomp/wiki/Download).
The main script for the analysis is `Chinook_sea_lion_mortality_analysis.R`. This script conducts the ananlysis but sources several other scripts contained within the `src` folder. Several packages are required to run this script, including "TMB" (Template Model builder), which requires RTools. [Download instruction here](https://github.com/kaskr/adcomp/wiki/Download).

The following files, which contian code for the anlaysis, can be found in the `src` folder.

`pop_surv_final.cpp` contains the Template Model Builder code for the HMM and the population-specfic migration timing.

`data_processing.R` contains functions to process data for the analysis.
Expand Down

0 comments on commit cee1b7a

Please sign in to comment.