An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools. We provide workflows, tutorials and a virtual box image to help researchers process microbial data.
Our paper on Microbiome Helper has been published in mSystems. Please cite this paper if you use our repository:
Comeau AM, Douglas GM, Langille MGI. 2017. Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research. mSystems 2(1): e00127-16; DOI: 10.1128/mSystems.00127-16
Please see our wiki site for more info.
- Please feel free to post a question on the Microbiome Helper google group if you have any issues.
- Other technical questions and bug reporting about this repository and tutorials can be sent to [email protected], and questions about the wet-lab protocols can be sent to [email protected].
- General comments or inquires about Microbiome Helper can be sent to [email protected].