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MitoHiFi_v3.01
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@marcelauliano marcelauliano released this 05 Apr 08:17
· 253 commits to master since this release
v3.01
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Learn about vigilant mode.

MitoHiFi current release (v3.01). Run within a singularity container or install each dependency. All that is included on v2.2 plus (i) flag --mitos for annotation to be run with MITOS instead of MitoFinder, (ii) shared_genes.tsv file showing comparisons of genes annotated in relation to genes on reference genome, (iii) plots gene annotations for final mito and all potential contigs, (iv) plots coverage mapping, (v) outputs mapped files to be upload to IGV to the folder coverage_mapping, (vi) cdhit allows clustering of large sequences with MAX_SEQ=10000000.

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