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Release v2.0.2

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@bkille bkille released this 19 Jan 18:05
· 62 commits to master since this release
2eeaa25
  • The interval for each xmfa record is now inclusive, following the xmfa format. This only effects the internal coordinate representation, used by gingr. The s[seq_idx]:p[position] coordinates remain unchanged.
  • tqdm logging has been redirected to the Parsnp logger
  • The extension module now also uses SPOA. However, it is still experimental.
  • Extension is much more conservative than before, but still can produce less conserved alignments