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More recruitment --> filtering renames
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bkille committed Nov 19, 2024
1 parent e9e819f commit cdb4beb
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions parsnp
Original file line number Diff line number Diff line change
Expand Up @@ -1349,7 +1349,7 @@ SETTINGS:
finalfiles = []
auto_ref = ""
if not curated and not args.skip_ANI_filter:
logger.info("Recruiting genomes...")
logger.info("Filtering genomes...")
if use_parsnp_mumi:
if not inifile_exists:
command = f"{PARSNP_DIR}/bin/parsnp_core {outputDir}/config/all_mumi.ini"
Expand Down Expand Up @@ -1464,7 +1464,7 @@ SETTINGS:
# shutil.rmtree(tmp_dir)
except subprocess.CalledProcessError as e:
logger.critical(
"Recruitment failed with exception {}. More details may be found in the *.err output log".format(str(e)))
"Filtering failed with exception {}. More details may be found in the *.err output log".format(str(e)))
# shutil.rmtree(tmp_dir)
allfiles.extend(finalfiles)

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