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Update README.md
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vcepeda authored Aug 4, 2017
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Expand Up @@ -39,20 +39,19 @@ You must have 8GB or more memory to allocate to the JVM (used by pilon).
--Output folder contains the following files:

1) metacompass_output folder:
Assembled contigs:
- Assembled contigs:
metacompass_output/metacompass.final.ctg.fa
Selected Reference genomes sequences:
- Selected Reference genomes sequences:
metacompass_output/metacompass.recruited.fa
Selected Reference genomes ids and taxonomy ids
- Selected Reference genomes ids and taxonomy ids
metacompass_output/metacompass.recruited.ids
2) Assembly information
metacompass.tsv file with the following information:
-contig ID
-contig size
-reference genome used (only reference-guided assembled contigs)
-start and end position in the genome where contig originates from
-taxonomic label of the genome
-name of the genome
2) metacompass.tsv file with the following information:
- contig ID
- contig size
- reference genome used (only reference-guided assembled contigs)
- start and end position in the genome where contig originates from
- taxonomic label of the genome
- name of the genome

# EXAMPLES
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