Add example: live FFT #146
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| name: Tests | |
| on: [push, pull_request] | |
| jobs: | |
| run_test_site: | |
| name: ${{ matrix.os }}-${{ matrix.os_version }}-py${{ matrix.PYTHON_VERSION }}${{ matrix.LABEL }} | |
| runs-on: ${{ matrix.os }}-${{ matrix.os_version }} | |
| timeout-minutes: 30 | |
| env: | |
| MPLBACKEND: agg | |
| PIP_ARGS: --upgrade -e | |
| PYTEST_ARGS: --pyargs hyperspy --reruns 3 --instafail | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu, windows, macos] | |
| os_version: [latest] | |
| PYTHON_VERSION: ['3.9', '3.10', ] | |
| PIP_SELECTOR: ['[all, tests, coverage]'] | |
| include: | |
| # test oldest supported version of main dependencies on python 3.8 | |
| - os: ubuntu | |
| os_version: latest | |
| PYTHON_VERSION: '3.8' | |
| PIP_SELECTOR: '[all, tests, coverage]' | |
| OLDEST_SUPPORTED_VERSION: true | |
| # Don't install pillow 10.4.0 because of its incompatibility with numpy 1.20.x | |
| # https://github.com/python-pillow/Pillow/pull/8187 | |
| DEPENDENCIES: dask[array]==2021.5.1 matplotlib==3.1.3 numba==0.52 numpy==1.20.0 scipy==1.6 scikit-image==0.18 scikit-learn==1.0.1 pillow!=10.4.0 | |
| LABEL: -oldest | |
| # test minimum requirement | |
| - os: ubuntu | |
| os_version: latest | |
| PYTHON_VERSION: '3.12' | |
| PIP_SELECTOR: '[tests, coverage]' | |
| LABEL: -minimum | |
| - os: ubuntu | |
| os_version: latest | |
| PYTHON_VERSION: '3.12' | |
| PIP_SELECTOR: '[tests, coverage]' | |
| NUMPY20: true | |
| LABEL: -npy20 | |
| - os: ubuntu | |
| os_version: latest | |
| PYTHON_VERSION: '3.8' | |
| PIP_SELECTOR: '[all, tests, coverage]' | |
| - os: ubuntu | |
| os_version: latest | |
| PYTHON_VERSION: '3.11' | |
| PIP_SELECTOR: '[all, tests, coverage]' | |
| - os: macos | |
| os_version: '13' | |
| PYTHON_VERSION: '3.11' | |
| PIP_SELECTOR: '[all, tests, coverage]' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| - name: Fetch tags upstream | |
| if: ${{ github.repository_owner != 'hyperspy' }} | |
| # Needs to fetch the tags from upstream to get the | |
| # correct version with setuptools_scm | |
| run: | | |
| git remote add upstream https://github.com/hyperspy/hyperspy.git | |
| git fetch upstream --tags | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: ${{ matrix.PYTHON_VERSION }} | |
| - name: Get the number of CPUs | |
| id: cpus | |
| run: | | |
| import os, platform | |
| num_cpus = os.cpu_count() | |
| print(f"Number of CPU: {num_cpus}") | |
| print(f"Architecture: {platform.machine()}") | |
| output_file = os.environ["GITHUB_OUTPUT"] | |
| with open(output_file, "a", encoding="utf-8") as output_stream: | |
| output_stream.write(f"count={num_cpus}\n") | |
| shell: python | |
| - name: Display version | |
| run: | | |
| python --version | |
| pip --version | |
| - name: Install oldest supported version | |
| if: ${{ matrix.OLDEST_SUPPORTED_VERSION }} | |
| run: | | |
| pip install ${{ matrix.DEPENDENCIES }} -v | |
| - name: Install numpy 2.0 | |
| if: ${{ matrix.NUMPY20 }} | |
| run: | | |
| pip install --pre numpy | |
| - name: Install | |
| shell: bash | |
| run: | | |
| pip install ${{ env.PIP_ARGS }} .'${{ matrix.PIP_SELECTOR }}' | |
| - name: Pip list | |
| run: | | |
| pip list | |
| - name: Run test suite | |
| run: | | |
| pytest ${{ env.PYTEST_ARGS }} -n ${{ steps.cpus.outputs.count }} --cov=. --cov-report=xml | |
| - name: Run doctest (Docstring) | |
| run: | | |
| pytest ${{ env.PYTEST_ARGS }} --doctest-modules --ignore=hyperspy/tests | |
| - name: Upload coverage to Codecov | |
| if: ${{ github.repository_owner == 'hyperspy' }} | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |