add application data with git LFS

mackelab · Mar 15, 2024 · bd2bc03 · bd2bc03
1 parent 4c12f39
commit bd2bc03
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Showing 38 changed files with 146 additions and 2 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1,31 @@
+data/applications/**/*.pt filter=lfs diff=lfs merge=lfs -text
+data/applications/roitman_data_clean.csv filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]Fibrosis(354).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_8230256665702590.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_16.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_51.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]Effusion(420).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]Pneumothorax_4393913345190889.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]Atelectasis[[:space:]]Emphysema(33).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]No[[:space:]]Finding(31015).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_2497489133216072.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_5136659941619265.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]Pneumonia_882473709848962.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_91.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]No[[:space:]]Finding(9672).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]Nodule(1319).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]Nodule(632).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_105.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_14.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]No[[:space:]]Finding(23648).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_1358946767253453.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_5607781897980469.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_42.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_73.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]No[[:space:]]Finding(13148).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/real/ChestXRay[[:space:]]No[[:space:]]Finding(29940).png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]Pneumonia_8865862005915204.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_63.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/gan/image_64.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]Edema_6107606052013594.png filter=lfs diff=lfs merge=lfs -text
+data/applications/cxr/sd/CXR-F-3000_ChestXRay[[:space:]]No[[:space:]]Finding_7190619533063244.png filter=lfs diff=lfs merge=lfs -text
diff --git a/.gitignore b/.gitignore
@@ -5,13 +5,14 @@ __pycache__/
 *.pt 
 *.pkl
 *.csv
+*.pdf
 
 # C extensions
 *.so
 
 # Distribution / packaging
 .Python
-data/
+# data/
 plots/
 build/
 develop-eggs/
@@ -173,5 +174,9 @@ configs/conf_default.yaml
 configs/conf_FIDinc.yaml
 
 # ImageNet
-data/*.pt
+# data/*.pt
 data.7z
+
+# except those in data/aplications
+!data/applications/*/*.pt
+!data/applications/*.csv
diff --git a/data/applications/cxr/encs_fake_pggan.pt b/data/applications/cxr/encs_fake_pggan.pt
diff --git a/data/applications/cxr/encs_fake_stable_diffusion.pt b/data/applications/cxr/encs_fake_stable_diffusion.pt
diff --git a/data/applications/cxr/encs_real.pt b/data/applications/cxr/encs_real.pt
diff --git a/data/applications/cxr/gan/image_105.png b/data/applications/cxr/gan/image_105.png
diff --git a/data/applications/cxr/gan/image_14.png b/data/applications/cxr/gan/image_14.png
diff --git a/data/applications/cxr/gan/image_16.png b/data/applications/cxr/gan/image_16.png
diff --git a/data/applications/cxr/gan/image_42.png b/data/applications/cxr/gan/image_42.png
diff --git a/data/applications/cxr/gan/image_51.png b/data/applications/cxr/gan/image_51.png
diff --git a/data/applications/cxr/gan/image_63.png b/data/applications/cxr/gan/image_63.png
diff --git a/data/applications/cxr/gan/image_64.png b/data/applications/cxr/gan/image_64.png
diff --git a/data/applications/cxr/gan/image_73.png b/data/applications/cxr/gan/image_73.png
diff --git a/data/applications/cxr/gan/image_91.png b/data/applications/cxr/gan/image_91.png
diff --git a/data/applications/cxr/real/ChestXRay Atelectasis Emphysema(33).png b/data/applications/cxr/real/ChestXRay Atelectasis Emphysema(33).png
diff --git a/data/applications/cxr/real/ChestXRay Effusion(420).png b/data/applications/cxr/real/ChestXRay Effusion(420).png
diff --git a/data/applications/cxr/real/ChestXRay Fibrosis(354).png b/data/applications/cxr/real/ChestXRay Fibrosis(354).png
diff --git a/data/applications/cxr/real/ChestXRay No Finding(13148).png b/data/applications/cxr/real/ChestXRay No Finding(13148).png
diff --git a/data/applications/cxr/real/ChestXRay No Finding(23648).png b/data/applications/cxr/real/ChestXRay No Finding(23648).png
diff --git a/data/applications/cxr/real/ChestXRay No Finding(29940).png b/data/applications/cxr/real/ChestXRay No Finding(29940).png
diff --git a/data/applications/cxr/real/ChestXRay No Finding(31015).png b/data/applications/cxr/real/ChestXRay No Finding(31015).png
diff --git a/data/applications/cxr/real/ChestXRay No Finding(9672).png b/data/applications/cxr/real/ChestXRay No Finding(9672).png
diff --git a/data/applications/cxr/real/ChestXRay Nodule(1319).png b/data/applications/cxr/real/ChestXRay Nodule(1319).png
diff --git a/data/applications/cxr/real/ChestXRay Nodule(632).png b/data/applications/cxr/real/ChestXRay Nodule(632).png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay Edema_6107606052013594.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay Edema_6107606052013594.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_1358946767253453.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_1358946767253453.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_2497489133216072.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_2497489133216072.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_5136659941619265.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_5136659941619265.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_5607781897980469.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_5607781897980469.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_7190619533063244.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_7190619533063244.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_8230256665702590.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay No Finding_8230256665702590.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumonia_882473709848962.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumonia_882473709848962.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumonia_8865862005915204.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumonia_8865862005915204.png
diff --git a/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumothorax_4393913345190889.png b/data/applications/cxr/sd/CXR-F-3000_ChestXRay Pneumothorax_4393913345190889.png
diff --git a/data/applications/ddm/generated_data.pt b/data/applications/ddm/generated_data.pt
diff --git a/data/applications/ddm/generated_data2.pt b/data/applications/ddm/generated_data2.pt
diff --git a/data/applications/ddm/real_data.pt b/data/applications/ddm/real_data.pt
diff --git a/data/applications/roitman_data_clean.csv b/data/applications/roitman_data_clean.csv