Merge pull request #38 from macaodha/test/add_audio_files_provided_by…

…_padpadpadpad_to_test_suite

test: Add failing audio files from GH-29 to contrib test suite

tests/test_cli.py

@@ -1,7 +1,9 @@
 """Test the command line interface."""
+
 from pathlib import Path
-from click.testing import CliRunner
+
 import pandas as pd
+from click.testing import CliRunner
 
 from batdetect2.cli import cli
 
@@ -11,7 +13,9 @@ def test_cli_base_command():
     runner = CliRunner()
     result = runner.invoke(cli, ["--help"])
     assert result.exit_code == 0
-    assert "BatDetect2 - Bat Call Detection and Classification" in result.output
+    assert (
+        "BatDetect2 - Bat Call Detection and Classification" in result.output
+    )
 
 
 def test_cli_detect_command_help():
@@ -68,8 +72,7 @@ def test_cli_detect_command_with_non_trivial_time_expansion(tmp_path):
     )
 
     assert result.exit_code == 0
-    assert 'Time Expansion Factor: 10' in result.stdout
-
+    assert "Time Expansion Factor: 10" in result.stdout
 
 
 def test_cli_detect_command_with_the_spec_feature_flag(tmp_path: Path):
@@ -94,13 +97,12 @@ def test_cli_detect_command_with_the_spec_feature_flag(tmp_path: Path):
     assert result.exit_code == 0
     assert results_dir.exists()
 
-
     csv_files = [path.name for path in results_dir.glob("*.csv")]
 
     expected_files = [
         "20170701_213954-MYOMYS-LR_0_0.5.wav_spec_features.csv",
         "20180530_213516-EPTSER-LR_0_0.5.wav_spec_features.csv",
-        "20180627_215323-RHIFER-LR_0_0.5.wav_spec_features.csv"
+        "20180627_215323-RHIFER-LR_0_0.5.wav_spec_features.csv",
     ]
 
     for expected_file in expected_files:

tests/test_contrib.py

@@ -9,7 +9,7 @@
 runner = CliRunner()
 
 
-def test_files_negative_dimensions_are_not_allowed(
+def test_can_process_jeff37_files(
     contrib_dir: Path,
     tmp_path: Path,
 ):
@@ -40,3 +40,34 @@ def test_files_negative_dimensions_are_not_allowed(
     assert results_dir.exists()
     assert len(list(results_dir.glob("*.csv"))) == 5
     assert len(list(results_dir.glob("*.json"))) == 5
+
+
+def test_can_process_padpadpadpad_files(
+    contrib_dir: Path,
+    tmp_path: Path,
+):
+    """This test stems from issue #29.
+
+    Batdetect2 cli failed on the files provided by the user @padpadpadpad
+    with the following error message:
+
+        AttributeError: module 'numpy' has no attribute 'AxisError'
+
+    This test ensures that the files are processed without any error.
+    """
+    path = contrib_dir / "padpadpadpad"
+    assert path.exists()
+    results_dir = tmp_path / "results"
+    result = runner.invoke(
+        cli,
+        [
+            "detect",
+            str(path),
+            str(results_dir),
+            "0.3",
+        ],
+    )
+    assert result.exit_code == 0
+    assert results_dir.exists()
+    assert len(list(results_dir.glob("*.csv"))) == 2
+    assert len(list(results_dir.glob("*.json"))) == 2