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lukszafron committed May 30, 2023
1 parent c9bf811 commit 092be5b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion methyl_arrays.r
Original file line number Diff line number Diff line change
Expand Up @@ -286,7 +286,7 @@ Beta.values.bin[Beta.values.bin < 0.5] <- 0

#Draw density plots of Beta-values
cat("Drawing density plots of beta values...\n")
# visualise what the data looks like before and after normalisation and filtering
# Visualize what the data looks like before and after normalization and filtering
pdf(paste("Density_plots", suffix, "pdf", sep = "."), height = 10, width = 7)
par(mfrow=c(3,1))
densityPlot(getBeta(mSetRaw), sampGroups=targets[[ind.factors[1]]],
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