cami plots

luizirber · Apr 7, 2020 · 7e6f227 · 7e6f227
1 parent 416a0d9
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diff --git a/thesis/03-gather.Rmd b/thesis/03-gather.Rmd
@@ -92,6 +92,11 @@ Intro: what is CAMI, what it provides:
 - low and medium datasets have viruses, which are not in sourmash indices
 }
 
+```{r gatherCAMIlow, eval=TRUE, echo=FALSE, message=FALSE, error=FALSE, warning=FALSE, cache=TRUE, out.width="500px", fig.width=4, fig.cap="CAMI I Low"}
+knitr::include_graphics('figure/cami_i_low_table.png')
+knitr::include_graphics('figure/cami_i_low_recall_precision.png')
+```
+
 #### CAMI 2 mouse gut toy challenge
 
 \todoin{
@@ -104,6 +109,11 @@ Intro: what is CAMI, what it provides:
 CAMI 2 refseq database also doesn't have viruses...
 }
 
+```{r gatherCAMImg, eval=TRUE, echo=FALSE, message=FALSE, error=FALSE, warning=FALSE, cache=TRUE, out.width="500px", fig.width=4, fig.cap="CAMI II Mouse Gut"}
+knitr::include_graphics('figure/cami_ii_mg_table.png')
+knitr::include_graphics('figure/cami_ii_mg_recall_precision.png')
+```
+
 ### Limitations
 
 \todoin{

diff --git a/thesis/figure/cami_i_low_recall_precision.png b/thesis/figure/cami_i_low_recall_precision.png
diff --git a/thesis/figure/cami_i_low_table.png b/thesis/figure/cami_i_low_table.png
diff --git a/thesis/figure/cami_ii_mg_recall_precision.png b/thesis/figure/cami_ii_mg_recall_precision.png
diff --git a/thesis/figure/cami_ii_mg_table.png b/thesis/figure/cami_ii_mg_table.png