mv-network-test-code

Code to reproduce simulations and data application from Gao, L.L., Witten, D., and Bien, J. Testing for Association in Multi-View Network Data.

Required R libraries:

multiviewtest, simulator, randnet, doParallel, Matrix, igraph, dplyr, ggplot2, grid, gridExtra, scales, patchwork

Code Dependencies:

Code for some figures (e.g. Figures 2, 3 and 4 in the main text) depend on the results of auxiliary files. Before running code for the figures, first:

• Run main.R in Sec_7_Subsec_1_2 with this.sim.id ranging from 1 to 12.
• Run main.R in Sec_7_Subsec_3_Web_Appendix_C with this.sim.id ranging from 1 to 4.
• Run init.R in Web_Appendix_B, then run continue.R in Web_Appendix_B with batch ranging from 1 to 10.
• Run Sec8.R.
• Run main.R in Web_Appendix_D with this.sim.id ranging from 1 to 3.
• Run main.R in Web_Appendix_E with this.sim.id ranging from 1 to 3.

Data Dependencies:

The binary interaction and co-complex association human protein-protein interaction data sets can be downloaded from the public HINT database. Here are the direct links:

1. Binary interaction data set
2. Co-complex association data set