update all forces converters to use the word 'forces' instead some us…

…ing 'force'
lorenzo-rovigatti · Dec 11, 2024 · 8c1060b · 8c1060b
1 parent 57ff94f
commit 8c1060b
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/analysis/oat-completion.sh b/analysis/oat-completion.sh
@@ -8,7 +8,7 @@ _oat_completions(){
 	fi
 
 
-	COMPREPLY=($(compgen -W "align anm_parameterize backbone_flexibility bond_analysis centroid clustering config contact_map db_to_force decimate deviations distance duplex_angle_plotter duplex_finder file_info forces2pairs generate_force mean minify multidimensional_scaling_mean output_bonds oxDNA_PDB pca persistence_length plot_energy subset_trajectory superimpose" "${COMP_WORDS[COMP_CWORD]}"))
+	COMPREPLY=($(compgen -W "align anm_parameterize backbone_flexibility bond_analysis centroid clustering config contact_map db2forces decimate deviations distance duplex_angle_plotter duplex_finder file_info forces2pairs generate_forces mean minify multidimensional_scaling_mean output_bonds oxDNA_PDB pca persistence_length plot_energy subset_trajectory superimpose" "${COMP_WORDS[COMP_CWORD]}"))
 }
 
 complete -F _oat_completions oat
diff --git a/...s/src/oxDNA_analysis_tools/db_to_force.py → ...sis/src/oxDNA_analysis_tools/db2forces.py b/...s/src/oxDNA_analysis_tools/db_to_force.py → ...sis/src/oxDNA_analysis_tools/db2forces.py
@@ -83,7 +83,7 @@ def db_to_forcelist(db_str:str, stiff:float, reverse:bool, r0:float=1.2, PBC:boo
 
     return force_list
 
-def cli_parser(prog="db_to_force.py"):
+def cli_parser(prog="db2forces.py"):
     parser = argparse.ArgumentParser(prog = prog, description="Create an external forces file enforcing the current base-pairing arrangement")
     parser.add_argument('db_file', type=str, nargs=1, help="A text file containing dot-bracket notation of the base-pairing arrangement")
     parser.add_argument('-o', '--output', type=str, nargs=1, help='Name of the file to write the force list to')

diff --git a/...rc/oxDNA_analysis_tools/generate_force.py → ...c/oxDNA_analysis_tools/generate_forces.py b/...rc/oxDNA_analysis_tools/generate_force.py → ...c/oxDNA_analysis_tools/generate_forces.py
@@ -3,7 +3,7 @@
 from oxDNA_analysis_tools.UTILS.logger import log, logger_settings
 import oxpy
 
-def cli_parser(prog="generate_force.py"):
+def cli_parser(prog="generate_forces.py"):
     parser = argparse.ArgumentParser(prog = prog, description="Create an external forces file enforcing the current base-pairing arrangement")
     parser.add_argument('inputfile', type=str, nargs=1, help="The inputfile used to run the simulation")
     parser.add_argument('configuration', type=str, nargs=1, help="The configuration to generate the forces from")