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Expand Up @@ -61,51 +61,137 @@ <h1>Publications
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<li><p><a href="https://proceedings.mlr.press/v227/liu24a.html">An end-to-end framework for diagnosing COVID-19 pneumonia via Parallel Recursive MLP module and Bi-LTSM correlation</a><br />
Yiwen Liu, Wenyu Xing, Mingbo Zhao,<b>Mingquan Lin (correspondance author)</b>. Medical Imaging with Deep Learning. <a href="https://proceedings.mlr.press/v227/liu24a.html">[arXiv]</a>
Yiwen Liu, Wenyu Xing, Mingbo Zhao,<b>Mingquan Lin (corresponding author)</b>. Medical Imaging with Deep Learning. <a href="https://proceedings.mlr.press/v227/liu24a.html">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1002/sta4.649">Deep learning models to predict primary open-angle glaucoma</a><br />
Ruiwen Zhou, J Philip Miller, Mae Gordon, Michael Kass, <b>Mingquan Lin</b>, Yifan Peng, Fuhai Li, Jiarui Feng, Lei Liu. Stat. <a href="https://doi.org/10.1002/sta4.649">[paper]</a>
</p>
</li>
<li><p><a href="https://dl.acm.org/doi/abs/10.1145/3492866.3549726"> Index-Aware Reinforcement Learning for Adaptive Video Streaming at the Wireless Edge</a><br />
<b>Guojun Xiong</b>, Xudong Qin, Bin Li, Rahul Singh, Jian Li. ACM Mobihoc 2022. <a href="https://dl.acm.org/doi/abs/10.1145/3492866.3549726">[arXiv]</a>
<li><p><a href="https://ieeexplore.ieee.org/document/10342841"> Multiclass and Multilabel Classifications by Consensus and Complementarity-Based Multiview Latent Space Projection</a><br />
Jianghong Ma, Weixuan Kou, <b>Mingquan Lin</b>, Carmen CM Cho, Bernard Chiu. IEEE Transactions on Systems, Man, and Cybernetics: Systems. <a href="https://ieeexplore.ieee.org/document/10342841">[arXiv]</a>
</p>
</li>
<li><p><a href="https://dl.acm.org/doi/abs/10.1109/INFOCOM48880.2022.9796809">Reinforcement Learning for Dynamic Dimensioning of Cloud Caches: A Restless Bandit Approach</a><br />
<b>Guojun Xiong</b>, Shufan Wang, Gang Yan, Jian Li. IEEE INFOCOM, 2022. <a href="https://dl.acm.org/doi/abs/10.1109/INFOCOM48880.2022.9796809">[arXiv]</a>
<li><p><a href="https://doi.org/10.1161/circ.148.suppl_1.349">Deep Learning Detection of Chest Compression Location Using Transesophageal Echocardiography</a><br />
Felipe Teran, ..., <b>Mingquan Lin</b>, Benjamin S Abella. Circulation. <a href="https://doi.org/10.1161/circ.148.suppl_1.349">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ojs.aaai.org/index.php/AAAI/article/view/20852">Reinforcement Learning Augmented Asymptotically Optimal Index Policies for Finite-Horizon Restless Bandits </a><br />
<b>Guojun Xiong</b>, Jian Li, Rahul Singh. AAAI 2022. <a href="https://ojs.aaai.org/index.php/AAAI/article/view/20852">[arXiv]</a>
<li><p><a href="https://www.nature.com/articles/s41467-023-41974-4">Improving model fairness in image-based computer-aided diagnosis </a><br />
<b>Mingquan Lin</b>, Tianhao Li, Yifan Yang, Gregory Holste, Ying Ding, Sarah H Van Tassel, Kyle Kovacs, George Shih, Zhangyang Wang, Zhiyong Lu, Fei Wang, Yifan Peng. Nature Communications. <a href="https://www.nature.com/articles/s41467-023-41974-4">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/document/9250692">Optimality conditions of
performance-guaranteed power minimization in mimo networks: A distributed algorithm and its
feasibility </a><br />
<b>Guojun Xiong</b>, Taejoon Kim, David J. Love, Erik Perrins. (IEEE Transaction on Signal Processing 2020). <a href="https://ieeexplore.ieee.org/document/9250692">[arXiv]</a>
<li><p><a href="https://doi.org/10.1016/j.jbi.2023.104482">A scoping review on multimodal deep learning in biomedical images and texts</a><br />
Zhaoyi Sun,<b>Mingquan Lin</b>, Qingqing Zhu, Qianqian Xie, Fei Wang, Zhiyong Lu, Yifan Peng. (Journal of Biomedical Informatics). <a href="https://doi.org/10.1016/j.jbi.2023.104482">[arXiv]</a>
</p>
</li>

</ul>

<h3>Preprints
</h3>
<ul>
<li><p><a href="https://link.springer.com/article/10.1007/s00521-023-08604-y">A new classification method for diagnosing COVID-19 pneumonia based on joint CNN features of chest X-ray images and parallel pyramid MLP-mixer module</a><br />
Yiwen Liu, Wenyu Xing, Mingbo Zhao, <b>Mingquan Lin (corresponding author)</b>. (Neural Computing and Applications). <a href="https://link.springer.com/article/10.1007/s00521-023-08604-y">[arXiv]</a>
</p>
</li>
<li><p>On the Linear Speedup of Personalized Federated Reinforcement Learning with Shared Representations<br />
<b>Guojun Xiong</b>, Shufan Wang, Daniel Jiang, Jian Li. (Submitted to Neurips 2024) <a href="https://openreview.net/forum?id=eo4f83Omjh&referrer=%5BAuthor%20Console%5D(%2Fgroup%3Fid%3DNeurIPS.cc%2F2024%2FConference%2FAuthors%23your-submissions)">[arXiv]</a>
<li><p><a href="https://ieeexplore.ieee.org/abstract/document/10337060">Optimizing Embedding Space with Sub-categorical Supervised Pre-training: A Theoretical Approach Towards Improving Sepsis Prediction</a><br />
Tingyi Wanyan, <b>Mingquan Lin</b>, Ying Ding, Benjamin Glicksberg, Fei Wang, Yifan Peng. (J2023 IEEE 11th International Conference on Healthcare Informatics (ICHI)). <a href="https://ieeexplore.ieee.org/abstract/document/10337060">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1016/j.compbiomed.2023.106962">Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access</a><br />
<b>Mingquan Lin</b>, Bojian Hou, Swati Mishra, Tianyuan Yao, Yuankai Huo, Qian Yang, Fei Wang, George Shih, Yifan Peng. (Computers in Biology and Medicine). <a href="https://doi.org/10.1016/j.compbiomed.2023.106962">[arXiv]</a>
</p>
</li>
<li><p><a href="https://link.springer.com/article/10.1007/s10489-022-03570-9">Person re-identification via semi-supervised adaptive graph embedding</a><br />
Jiao Liu, <b>Mingquan Lin (co-first author)</b>, Mingbo Zhao, Choujun Zhan, Bing Li, John Kwok Tai Chui. (Applied Intelligence). <a href="https://link.springer.com/article/10.1007/s10489-022-03570-9">[arXiv]</a>
</p>
</li>
<li><p>Direct Online Preference Learning for Restless Multi-Armed Bandits with Preference Feedback<br />
<b>Guojun Xiong</b>, Ujwal Dinesha, Debajoy Mukherjee, Jian Li, Srinivas Shakkottai. (Submitted to Neurips 2024) <a href="https://openreview.net/forum?id=eo4f83Omjh&referrer=%5BAuthor%20Console%5D(%2Fgroup%3Fid%3DNeurIPS.cc%2F2024%2FConference%2FAuthors%23your-submissions)">[arXiv]</a>
<li><p><a href="https://physionet.org/content/cxr-lt-iccv-workshop-cvamd/1.1.0/">CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays</a><br />
Gregory Holste, Song Wang, Ajay Jaiswal, Yuzhe Yang, <b>Mingquan Lin</b>, Yifan Peng, Atlas Wang. (PhysioNet). <a href="https://physionet.org/content/cxr-lt-iccv-workshop-cvamd/1.1.0/">[arXiv]</a>
</p>
</li>
<li><p><a href="https://arxiv.org/pdf/2306.06559">Straggler-resilient decentralized learning via adaptive asynchronous updates</a><br />
<b>Guojun Xiong*</b>, Gang Yan*, Shiqiang Wang, Jian Li. (Under review) <a href="https://arxiv.org/pdf/2306.06559">[arXiv]</a>
<li><p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10283103/">Evaluate underdiagnosis and overdiagnosis bias of deep learning model on primary open-angle glaucoma diagnosis in under-served populations</a><br />
<b>Mingquan Lin</b>, Yunyu Xiao, Bojian Hou, Tingyi Wanyan, Mohit Manoj Sharma, Zhangyang Wang, Fei Wang, Sarah Van Tassel, Yifan Peng. (AMIA Summits on Translational Science Proceedings). <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10283103/">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/abstract/document/9970507">Multimodal Image Classification by Multiview Latent Pattern Extraction, Selection, and Correlation</a><br />
Jianghong Ma, Weixuan Kou,<b>Mingquan Lin</b>, Carmen CM Cho, Bernard Chiu. (IEEE Transactions on Neural Networks and Learning Systems). <a href="https://ieeexplore.ieee.org/abstract/document/9970507">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1016/j.xops.2022.100209">Primary Open-Angle Glaucoma Diagnosis From Optic Disc Photographs Using a Siamese Network</a><br />
<b>Mingquan Lin</b>, Lei Liu, Mae Gordon, Michael Kass, Fei Wang, Sarah H Van Tassel, Yifan Peng. (Ophthalmology Science). <a href="https://doi.org/10.1016/j.xops.2022.100209">[arXiv]</a>
</p>
</li>
<li><p><a href="https://link.springer.com/chapter/10.1007/978-3-031-21014-3_45">Multi-scale Multi-structure Siamese Network (MMSNet) for Primary Open-Angle Glaucoma Prediction</a><br />
<b>Mingquan Lin</b>, Lei Liu, Mae Gorden, Michael Kass, Sarah Van Tassel, Fei Wang, Yifan Peng. (International Workshop on Machine Learning in Medical Imaging). <a href="https://link.springer.com/chapter/10.1007/978-3-031-21014-3_45">[arXiv]</a>
</p>
</li>
<li><p><a href="https://www.nature.com/articles/s41598-022-17753-4">Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning</a><br />
<b>Mingquan Lin</b>, Bojian Hou, Lei Liu, Mae Gordon, Michael Kass, Fei Wang, Sarah H Van Tassel, Yifan Peng. (Scientific reports). <a href="https://www.nature.com/articles/s41598-022-17753-4">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1145/3535508.354554">Supervised pretraining through contrastive categorical positive samplings to improve COVID-19 mortality prediction</a><br />
Tingyi Wanyan, <b>Mingquan Lin</b>, Eyal Klang, Kartikeya M Menon, Faris F Gulamali, Ariful Azad, Yiye Zhang, Ying Ding, Zhangyang Wang, Fei Wang, Benjamin Glicksberg, Yifan Peng. (ACM BCB). <a href="https://doi.org/10.1145/3535508.354554">[arXiv]</a>
</p>
</li>
<li><p><a href="https://spj.science.org/doi/epdf/10.34133/2022/9841548">Knowledge Graph Applications in Medical Imaging Analysis: A Scoping Review</a><br />
Song Wang, <b>Mingquan Lin (co-first author)</b>, Tirthankar Ghosal, Ying Ding, Yifan Peng. (Health data science). <a href="https://spj.science.org/doi/epdf/10.34133/2022/9841548">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/document/9874495">Radiology text analysis system (RadText): architecture and evaluation</a><br />
Song Wang, <b>Mingquan Lin</b>, Ying Ding, George Shih, Zhiyong Lu, Yifan Peng. (IEEE ICHI 2022). <a href="https://ieeexplore.ieee.org/document/9874495">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/abstract/document/9691831">Cascaded Triplanar Autoencoder M-Net for Fully Automatic Segmentation of Left Ventricle Myocardial Scar From Three-Dimensional Late Gadolinium-Enhanced MR Images</a><br />
<b>Mingquan Lin</b>, Mingjie Jiang, Mingbo Zhao, Eranga Ukwatta, James A White, Bernard Chiu. (IEEE JBHI). <a href="https://ieeexplore.ieee.org/abstract/document/9691831">[arXiv]</a>
</p>
</li>
<li><p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9285179/">Prior knowledge enhances radiology report generation</a><br />
Song Wang, Liyan Tang, <b>Mingquan Lin</b>, George Shih, Ying Ding, Yifan Peng. (AMIA Summits on Translational Science Proceedings). <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9285179/">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/abstract/document/9565737">An empirical study of using radiology reports and images to improve ICU-mortality prediction</a><br />
<b>Mingquan Lin</b>, Song Wang, Ying Ding, Lihui Zhao, Fei Wang, Yifan Peng. (2021 IEEE 9th International Conference on Healthcare Informatics (ICHI)). <a href="https://ieeexplore.ieee.org/abstract/document/9565737">[arXiv]</a>
</p>
</li>
<li><p><a href="https://ieeexplore.ieee.org/abstract/document/9565737">An empirical study of using radiology reports and images to improve ICU-mortality prediction</a><br />
<b>Mingquan Lin</b>, Song Wang, Ying Ding, Lihui Zhao, Fei Wang, Yifan Peng. (2021 IEEE 9th International Conference on Healthcare Informatics (ICHI)). <a href="https://ieeexplore.ieee.org/abstract/document/9565737">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1002/mp.15032">Fully automated segmentation of brain tumor from multiparametric MRI using 3D context deep supervised U‐Net</a><br />
<b>Mingquan Lin</b>, Shadab Momin, Yang Lei, Hesheng Wang, Walter J Curran, Tian Liu, Xiaofeng Yang. (Medical Physics). <a href=" https://doi.org/10.1002/mp.15032">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1002/acm2.13321">Artificial intelligence in tumor subregion analysis based on medical imaging: A review</a><br />
<b>Mingquan Lin</b>, Jacob F Wynne, Boran Zhou, Tonghe Wang, Yang Lei, Walter J Curran, Tian Liu, Xiaofeng Yang. (Journal of Applied Clinical Medical Physics). <a href=" https://doi.org/10.1002/acm2.13321">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1117/12.2581118">Fully automated segmentation of brain tumor from multiparametric MRI using 3D context U-Net with deep supervision</a><br />
<b>Mingquan Lin</b>, Shadab Momin, Boran Zhou, Katherine Tang, Yang Lei, Walter J Curran, Tian Liu, Xiaofeng Yang. (Medical Imaging 2021: Computer-Aided Diagnosis). <a href="https://doi.org/10.1117/12.2581118">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1117/12.2581139">Ultrasound GLCM texture analysis of radiation-induced acute toxicity following breast cancer radiotherapy</a><br />
Boran Zhou, <b>Mingquan Lin</b>, Xiaofeng Yang, Simone Henry, Jolinta Lin, Karen Godette, Shannon T Kahn, Walter J Curran, Mylin A Torres, Tian Liu. (Medical Imaging 2021: Ultrasonic Imaging and Tomography). <a href="https://doi.org/10.1117/12.2581139">[arXiv]</a>
</p>
</li>
<li><p><a href="https://doi.org/10.1117/12.2581143">Region of interest discovery using discriminative concrete autoencoder for COVID-19 lung CT images</a><br />
Yupei Zhang, Yang Lei, <b>Mingquan Lin</b>, Walter Curran, Tian Liu, Xiaofeng Yang. (Medical Imaging 2021: Computer-Aided Diagnosis). <a href="https://doi.org/10.1117/12.2581143">[arXiv]</a>
</p>
</li>
<li><p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861661/">Using radiomics as prior knowledge for thorax disease classification and localization in chest x-rays</a><br />
Yan Han, Chongyan Chen, Liyan Tang, <b>Mingquan Lin</b>, Ajay Jaiswal, Song Wang, Ahmed Tewfik, George Shih, Ying Ding, Yifan Peng. (AMIA Annual Symposium Proceedings). <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861661/">[arXiv]</a>
</p>
</li>
<li><p><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861665/">Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS</a><br />
Gregory Ghahramani, Matthew Brendel, <b>Mingquan Lin</b>, Qingyu Chen, Tiarnan Keenan, Kun Chen, Emily Chew, Zhiyong Lu, Yifan Peng, Fei Wang. (AMIA Annual Symposium Proceedings). <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8861665/">[arXiv]</a>
</p>
</li>
</ul>

<h3>Preprints
</h3>
<ul>

<li><p>Interpretable Differential Diagnosis with Dual-Inference Large Language Models<br />
Shuang Zhou, Sirui Ding, Jiashuo Wang, <b>Mingquan Lin</b>, Genevieve B. Melton, Rui Zhang. <a href="https://doi.org/10.48550/arXiv.2407.07330">[arXiv]</a>
</p>
</li>

</ul>

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