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Added Python module isolation-forest-onnx which can convert an isolat…
…ion forest model to ONNX format. (#53) * Added Python module isolation-forest-onnx which can convert an isolation forest model to ONNX format. * Added setuptools dev dependency for venv.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,60 @@ | ||
| .gradle | ||
| # Gradle and Build directories | ||
| .gradle/ | ||
| build/ | ||
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| # macOS system files | ||
| .DS_Store | ||
| .idea | ||
| spark-warehouse | ||
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| # IDE configurations | ||
| .idea/ | ||
| *.ipr | ||
| *.iml | ||
| *.iws | ||
| .vscode/ | ||
| .sublime-* | ||
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| # Python artifacts and caches | ||
| *.egg | ||
| *.egg-info/ | ||
| *.pyc | ||
| *.pyo | ||
| __pycache__/ | ||
| .cache/ | ||
| .tox* | ||
| .venv* | ||
| .env | ||
| .envrc | ||
| .direnv/ | ||
| .mypy_cache/ | ||
| pinned.txt | ||
| /*/*pinned.txt | ||
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| # Test-related files | ||
| .coverage | ||
| TEST-*.xml | ||
| coverage.xml | ||
| /htmlcov/ | ||
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| # Python build artifacts | ||
| dist/ | ||
| /build/ | ||
| /*/dist/ | ||
| /*/build/ | ||
| /MANIFEST | ||
| /*/MANIFEST | ||
| /*/activate | ||
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| # Configuration files | ||
| product-spec.json | ||
| /*/product-spec.json | ||
| config/ | ||
| /config/external/ | ||
| /*/config | ||
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| # Miscellaneous project files | ||
| spark-warehouse | ||
| version.txt | ||
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| # Project-specific paths | ||
| isolation-forest/bin | ||
| isolation-forest-onnx/venv |
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| include version.txt |
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| plugins { | ||
| id 'base' | ||
| } | ||
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| def venvDir = file('venv') // Directory for the virtual environment | ||
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| task createVersionFile { | ||
| description = 'Create version.txt file for package version used in setup.py' | ||
| doLast { | ||
| def versionFile = file("${projectDir}/version.txt") | ||
| versionFile.parentFile.mkdirs() | ||
| versionFile.text = project.version | ||
| } | ||
| } | ||
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| task createVenv(type: Exec) { | ||
| description = 'Create a Python virtual environment' | ||
| commandLine 'python3', '-m', 'venv', venvDir | ||
| } | ||
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| task installDependencies(type: Exec) { | ||
| description = 'Install Python dependencies into the virtual environment' | ||
| dependsOn createVenv | ||
| commandLine "${venvDir}/bin/pip", 'install', '-r', 'requirements-dev.txt' | ||
| } | ||
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| task buildPythonPackage(type: Exec) { | ||
| description = 'Build the Python source distribution and wheel' | ||
| dependsOn installDependencies, createVersionFile | ||
| commandLine "${venvDir}/bin/python", 'setup.py', 'sdist', 'bdist_wheel' | ||
| } | ||
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| // Task to publish the Python package to PyPI | ||
| task publishPythonPackage(type: Exec) { | ||
| description = 'Upload the Python package to PyPI' | ||
| group = 'upload' | ||
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| dependsOn buildPythonPackage | ||
| environment 'TWINE_USERNAME', '__token__' | ||
| environment 'TWINE_PASSWORD', System.getenv('PYPI_TOKEN') | ||
| commandLine "${venvDir}/bin/twine", 'upload', 'dist/*' | ||
| } | ||
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| task publishPythonPackageToTestPyPI(type: Exec) { | ||
| description = 'Upload the Python package to Test PyPI' | ||
| group = 'upload' | ||
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| dependsOn buildPythonPackage | ||
| environment 'TWINE_USERNAME', '__token__' | ||
| environment 'TWINE_PASSWORD', System.getenv('TEST_PYPI_TOKEN') | ||
| commandLine "${venvDir}/bin/twine", 'upload', '--repository-url', 'https://test.pypi.org/legacy/', 'dist/*' | ||
| } | ||
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| task test(type: Exec) { | ||
| description = 'Run Python tests using pytest' | ||
| group = 'verification' | ||
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| dependsOn installDependencies | ||
| environment 'PYTHONPATH', "${projectDir}/src" | ||
| commandLine "${venvDir}/bin/python", '-m', 'pytest', 'test', '--junitxml=build/reports/tests/TEST-pytest.xml' | ||
| inputs.dir file("src") | ||
| inputs.dir file("test") | ||
| outputs.dir file("build/reports/tests") | ||
| } | ||
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| task runCoverage(type: Exec) { | ||
| description = 'Run tests with coverage' | ||
| group = 'verification' | ||
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| dependsOn installDependencies | ||
| environment 'PYTHONPATH', "${projectDir}/src" | ||
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| // Define the coverage report directory | ||
| def coverageReportDir = file("${buildDir}/reports/coverage") | ||
| def coverageFile = file("${coverageReportDir}/.coverage") | ||
| def coverageReportFile = file("${coverageReportDir}/coverage_report.txt") | ||
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| // Create the directory if it doesn't exist | ||
| doFirst { | ||
| if (!coverageReportDir.exists()) { | ||
| coverageReportDir.mkdirs() | ||
| } | ||
| } | ||
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| commandLine 'bash', '-c', ". ${venvDir}/bin/activate && coverage run --data-file=${coverageFile} -m pytest" | ||
| doLast { | ||
| // Generate the coverage report and output it to the specified file | ||
| exec { | ||
| commandLine 'bash', '-c', ". ${venvDir}/bin/activate && coverage report --data-file=${coverageFile} > ${coverageReportFile}" | ||
| } | ||
| // Generate HTML coverage report | ||
| exec { | ||
| commandLine 'bash', '-c', ". ${venvDir}/bin/activate && coverage html -d ${coverageReportDir}/html_report --data-file=${coverageFile}" | ||
| } | ||
| } | ||
| } | ||
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| task runFlake8(type: Exec) { | ||
| description = 'Run flake8 linting' | ||
| group = 'verification' | ||
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| dependsOn installDependencies | ||
| commandLine 'bash', '-c', ". ${venvDir}/bin/activate && flake8" | ||
| } | ||
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| task runMypy(type: Exec) { | ||
| description = 'Run mypy type checks' | ||
| group = 'verification' | ||
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| dependsOn installDependencies | ||
| commandLine 'bash', '-c', ". ${venvDir}/bin/activate && mypy src" | ||
| inputs.dir file("src") | ||
| outputs.dir file("build/reports/mypy") | ||
| } | ||
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| clean { | ||
| delete 'venv' // Virtual environment for Python | ||
| delete 'dist' // Python distribution directory | ||
| delete 'version.txt' // Version file used for setup.py | ||
| } | ||
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| // Define task dependencies | ||
| check.dependsOn test, runFlake8, runCoverage, runMypy | ||
| build.dependsOn buildPythonPackage |
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