Fixes a bug the bootstrap of Charpoly ArithProgPrecond method #178
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run Sage CI for Linux/Cygwin/macOS | |
| ## This GitHub Actions workflow provides: | |
| ## | |
| ## - portability testing, by building and testing this project on many platforms | |
| ## (Linux variants and Cygwin), each with two configurations (installed packages), | |
| ## | |
| ## - continuous integration, by building and testing other software | |
| ## that depends on this project. | |
| ## | |
| ## It runs on every push to the GitHub repository. | |
| ## | |
| ## The testing can be monitored in the "Actions" tab of the GitHub repository. | |
| ## | |
| ## After all jobs have finished (or are canceled) and a short delay, | |
| ## tar files of all logs are made available as "build artifacts". | |
| ## | |
| ## This GitHub Actions workflow uses the portability testing framework | |
| ## of SageMath (https://www.sagemath.org/). For more information, see | |
| ## https://doc.sagemath.org/html/en/developer/portability_testing.html | |
| ## The workflow consists of two jobs: | |
| ## | |
| ## - First, it builds a source distribution of the project | |
| ## and generates a script "update-pkgs.sh". It uploads them | |
| ## as a build artifact named upstream. | |
| ## | |
| ## - Second, it checks out a copy of the SageMath source tree. | |
| ## It downloads the upstream artifact and replaces the project's | |
| ## package in the SageMath distribution by the newly packaged one | |
| ## from the upstream artifact, by running the script "update-pkgs.sh". | |
| ## Then it builds a small portion of the Sage distribution. | |
| ## | |
| ## Many copies of the second step are run in parallel for each of the tested | |
| ## systems/configurations. | |
| ## on: [push, pull_request] | |
| ## Uncomment this (and comment the above) to run only on pushes to a tag, | |
| ## not on all pushes to a branch. | |
| ## | |
| on: | |
| pull_request: | |
| types: [opened, synchronize] | |
| push: | |
| tags: | |
| - 'SageCI' | |
| env: | |
| # Ubuntu packages to install so that the projects' "make dist" can succeed | |
| DIST_PREREQ: libtool libopenblas-dev libgmp-dev | |
| # Name of this project in the Sage distribution | |
| SPKG: fflas_ffpack | |
| # Sage distribution packages to build | |
| TARGETS_PRE: build/make/Makefile | |
| TARGETS: SAGE_CHECK=no SAGE_CHECK_givaro=yes SAGE_CHECK_fflas_ffpack=yes SAGE_CHECK_linbox=yes fflas_ffpack sagemath_linbox | |
| TARGETS_OPTIONAL: build/make/Makefile | |
| # Standard setting: Test the current beta release of Sage: | |
| SAGE_REPO: sagemath/sage | |
| SAGE_REF: develop | |
| # Test with the branch from sage ticket 31444 merged (provides modularized package sagemath-linbox) | |
| SAGE_TRAC_GIT: https://github.com/sagemath/sagetrac-mirror.git | |
| SAGE_TICKET: 31444 | |
| REMOVE_PATCHES: "*" | |
| EXTRA_CONFIGURE_ARGS: --without-system-givaro --without-system-fflas_ffpack --without-system-linbox | |
| jobs: | |
| dist: | |
| runs-on: ubuntu-latest | |
| env: | |
| PREFIX: /tmp/build | |
| steps: | |
| - name: Check out givaro | |
| uses: actions/checkout@v2 | |
| with: | |
| path: build/pkgs/givaro/src | |
| repository: linbox-team/givaro | |
| - name: Check out ${{ env.SPKG }} | |
| uses: actions/checkout@v2 | |
| with: | |
| path: build/pkgs/${{ env.SPKG }}/src | |
| - name: Check out linbox | |
| uses: actions/checkout@v2 | |
| with: | |
| path: build/pkgs/linbox/src | |
| repository: linbox-team/linbox | |
| - name: Install prerequisites | |
| run: | | |
| sudo DEBIAN_FRONTEND=noninteractive apt-get update | |
| sudo DEBIAN_FRONTEND=noninteractive apt-get install $DIST_PREREQ | |
| - name: Run make dist, prepare upstream artifact | |
| run: | | |
| (cd build/pkgs/givaro/src && autoreconf -fi && ./configure --prefix=${{ env.PREFIX }} && make -j3 && make install && make dist) \ | |
| && export PKG_CONFIG_PATH="${{ env.PREFIX }}/lib/pkgconfig:$PKG_CONFIG_PATH" \ | |
| && mkdir -p upstream && cp build/pkgs/givaro/src/*.tar.gz upstream/givaro-git.tar.gz \ | |
| && echo "sage-package create givaro --version git --tarball givaro-git.tar.gz --type=standard" > upstream/update-pkgs.sh \ | |
| && if [ -n "${{ env.REMOVE_PATCHES }}" ]; then echo "(cd ../build/pkgs/givaro/patches && rm -f ${{ env.REMOVE_PATCHES }}; :)" >> upstream/update-pkgs.sh; fi \ | |
| && (cd build/pkgs/${{ env.SPKG }}/src && autoreconf -fi && ./configure --prefix=${{ env.PREFIX }} && make -j3 && make install && make dist) \ | |
| && mkdir -p upstream && cp build/pkgs/${{ env.SPKG }}/src/*.tar.gz upstream/${{ env.SPKG }}-git.tar.gz \ | |
| && echo "sage-package create ${{ env.SPKG }} --version git --tarball ${{ env.SPKG }}-git.tar.gz --type=standard" >> upstream/update-pkgs.sh \ | |
| && if [ -n "${{ env.REMOVE_PATCHES }}" ]; then echo "(cd ../build/pkgs/${{ env.SPKG }}/patches && rm -f ${{ env.REMOVE_PATCHES }}; :)" >> upstream/update-pkgs.sh; fi \ | |
| && (cd build/pkgs/linbox/src && autoreconf -fi && ./configure --prefix=${{ env.PREFIX }} && make dist) \ | |
| && mkdir -p upstream && cp build/pkgs/linbox/src/*.tar.gz upstream/linbox-git.tar.gz \ | |
| && echo "sage-package create linbox --version git --tarball linbox-git.tar.gz --type=standard" >> upstream/update-pkgs.sh \ | |
| && if [ -n "${{ env.REMOVE_PATCHES }}" ]; then echo "(cd ../build/pkgs/linbox/patches && rm -f ${{ env.REMOVE_PATCHES }}; :)" >> upstream/update-pkgs.sh; fi \ | |
| && ls -l upstream/ | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: upstream | |
| name: upstream | |
| cygwin: | |
| env: | |
| STAGE: i-a | |
| LOCAL_ARTIFACT_NAME: sage-local-commit-${{ github.sha }}-cygwin-${{ matrix.pkgs }} | |
| LOGS_ARTIFACT_NAME: logs-commit-${{ github.sha }}-cygwin-${{ matrix.pkgs }} | |
| MAKE: make -j8 | |
| SAGE_NUM_THREADS: 3 | |
| SAGE_CHECK: yes | |
| SAGE_CHECK_PACKAGES: "!cython,!r,!python3,!python2,!nose,!pathpy,!gap,!cysignals,!linbox,!git,!ppl" | |
| CYGWIN: winsymlinks:native | |
| CONFIGURE_ARGS: --enable-experimental-packages --enable-download-from-upstream-url | |
| SAGE_FAT_BINARY: yes | |
| SAGE_LOCAL: /opt/sage-fflas-ffpack-${{ github.sha }} | |
| runs-on: windows-latest | |
| needs: [dist] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| pkgs: [minimal, standard] | |
| steps: | |
| - run: | | |
| git config --global core.autocrlf false | |
| git config --global core.symlinks true | |
| - name: install cygwin with choco | |
| shell: bash {0} | |
| run: | | |
| choco --version | |
| choco install git python3 --source cygwin | |
| - name: Check out SageMath | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: ${{ env.SAGE_REPO }} | |
| ref: ${{ env.SAGE_REF }} | |
| fetch-depth: 2000 | |
| if: env.SAGE_REPO != '' | |
| - name: Check out git-trac-command | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: sagemath/git-trac-command | |
| path: git-trac-command | |
| if: env.SAGE_TRAC_GIT != '' | |
| - name: Check out SageMath from trac.sagemath.org | |
| shell: bash {0} | |
| # Random sleep and retry to limit the load on trac.sagemath.org | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "ci-sage workflow" | |
| if [ ! -d .git ]; then git init; fi; git remote add trac ${{ env.SAGE_TRAC_GIT }} && x=1 && while [ $x -le 5 ]; do x=$(( $x + 1 )); sleep $(( $RANDOM % 60 + 1 )); if git-trac-command/git-trac fetch $SAGE_TICKET; then git merge FETCH_HEAD || echo "(ignored)"; exit 0; fi; sleep 40; done; exit 1 | |
| if: env.SAGE_TRAC_GIT != '' | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| path: upstream | |
| name: upstream | |
| - name: install minimal prerequisites with choco | |
| shell: bash {0} | |
| run: | | |
| choco --version | |
| PACKAGES="python38 python38-pip" | |
| choco install $PACKAGES --source cygwin | |
| - name: Update Sage packages from upstream artifact | |
| run: | | |
| C:\\tools\\cygwin\\bin\\bash -l -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && ls -l upstream/ && export PATH="$(pwd)/build/bin:$PATH:/usr/local/bin:/usr/bin" && (cd upstream && bash -x update-pkgs.sh) && git diff' | |
| - name: tox | |
| run: | | |
| C:\\tools\\cygwin\\bin\\bash -l -x -c 'python3.8 -m pip install tox' | |
| C:\\tools\\cygwin\\bin\\bash -l -x -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && PREFIX="${{ env.SAGE_LOCAL }}" tox -e local-cygwin-choco-${{ matrix.pkgs }} -- $TARGETS' | |
| - name: Prepare logs artifact | |
| shell: bash | |
| run: | | |
| mkdir -p "artifacts/$LOGS_ARTIFACT_NAME"; for a in local/var/tmp/sage/build/*; do if [ -d $a ]; then tar -c --remove-files -f "artifacts/$LOGS_ARTIFACT_NAME/$(basename $a).tar" $a || tar -c --ignore-failed-read -f "artifacts/$LOGS_ARTIFACT_NAME/$(basename $a)-save.tar" $a ; fi; done; cp -r logs/* "artifacts/$LOGS_ARTIFACT_NAME" | |
| if: always() | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: artifacts | |
| name: ${{ env.LOGS_ARTIFACT_NAME }} | |
| if: always() | |
| - name: Print out logs for immediate inspection | |
| # The markup in the output is a GitHub Actions logging command | |
| # https://help.github.com/en/actions/automating-your-workflow-with-github-actions/development-tools-for-github-actions | |
| shell: bash | |
| run: | | |
| find "artifacts/$LOGS_ARTIFACT_NAME" -type f -name "*.log" -exec sh -c 'if tail -20 "{}" 2>/dev/null | grep "^Error" >/dev/null; then echo :":"error file={}:":" ==== LOG FILE {} CONTAINS AN ERROR ====; cat {} ; fi' \; | |
| if: always() | |
| - name: Prepare sage-local artifact | |
| # We specifically use the cygwin tar so that symlinks are saved/restored correctly on Windows. | |
| # We remove the $SAGE_LOCAL/lib64 link, which will be recreated by the next stage. | |
| run: | | |
| C:\\tools\\cygwin\\bin\\bash -l -c 'cd $(cygpath -u "$GITHUB_WORKSPACE") && rm -f "${{ env.SAGE_LOCAL }}"/lib64; tar -cf /tmp/sage-local-${{ env.STAGE }}.tar --remove-files "${{ env.SAGE_LOCAL }}"' | |
| if: always() | |
| - uses: actions/upload-artifact@v2 | |
| # upload-artifact@v2 does not support whitespace in file names. | |
| # so we tar up the directory ourselves | |
| with: | |
| path: C:\\tools\\cygwin\\tmp\\sage-local-${{ env.STAGE }}.tar | |
| name: ${{ env.LOCAL_ARTIFACT_NAME }} | |
| if: always() | |
| docker: | |
| runs-on: ubuntu-latest | |
| needs: [dist] | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 32 | |
| matrix: | |
| tox_system_factor: [ubuntu-xenial, ubuntu-bionic, ubuntu-focal, ubuntu-groovy, ubuntu-hirsute, debian-stretch, debian-buster, debian-bullseye, debian-sid, linuxmint-18, linuxmint-19, linuxmint-19.3, linuxmint-20.1, fedora-26, fedora-27, fedora-28, fedora-29, fedora-30, fedora-31, fedora-32, fedora-33, fedora-34, centos-8, gentoo, archlinux-latest, slackware-14.2, conda-forge, ubuntu-bionic-i386, debian-buster-i386, centos-7-i386, raspbian-buster-armhf] | |
| tox_packages_factor: [minimal, standard] | |
| env: | |
| TOX_ENV: docker-${{ matrix.tox_system_factor }}-${{ matrix.tox_packages_factor }} | |
| LOGS_ARTIFACT_NAME: logs-commit-${{ github.sha }}-tox-docker-${{ matrix.tox_system_factor }}-${{ matrix.tox_packages_factor }} | |
| DOCKER_TARGETS: configured with-targets with-targets-optional | |
| steps: | |
| - name: Check out SageMath | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: ${{ env.SAGE_REPO }} | |
| ref: ${{ env.SAGE_REF }} | |
| fetch-depth: 2000 | |
| if: env.SAGE_REPO != '' | |
| - name: Check out git-trac-command | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: sagemath/git-trac-command | |
| path: git-trac-command | |
| if: env.SAGE_TRAC_GIT != '' | |
| - name: Check out SageMath from trac.sagemath.org | |
| shell: bash {0} | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "ci-sage workflow" | |
| if [ ! -d .git ]; then git init; fi; git remote add trac ${{ env.SAGE_TRAC_GIT }} && x=1 && while [ $x -le 5 ]; do x=$(( $x + 1 )); sleep $(( $RANDOM % 60 + 1 )); if git-trac-command/git-trac fetch $SAGE_TICKET; then git merge FETCH_HEAD || echo "(ignored)"; exit 0; fi; sleep 40; done; exit 1 | |
| if: env.SAGE_TRAC_GIT != '' | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| path: upstream | |
| name: upstream | |
| - name: Install test prerequisites | |
| run: | | |
| sudo DEBIAN_FRONTEND=noninteractive apt-get update | |
| sudo DEBIAN_FRONTEND=noninteractive apt-get install tox python3-setuptools | |
| - name: Update Sage packages from upstream artifact | |
| run: | | |
| (export PATH=$(pwd)/build/bin:$PATH; (cd upstream && bash -x update-pkgs.sh) && sed -i.bak '/upstream/d' .dockerignore && echo "/:toolchain:/i ADD upstream upstream" | sed -i.bak -f - build/bin/write-dockerfile.sh && git diff) | |
| - name: Configure and build Sage distribution within a Docker container | |
| run: | | |
| set -o pipefail; EXTRA_DOCKER_BUILD_ARGS="--build-arg USE_MAKEFLAGS=\"-k V=0 SAGE_NUM_THREADS=3\"" tox -e $TOX_ENV -- $TARGETS 2>&1 | sed "/^configure: notice:/s|^|::warning file=artifacts/$LOGS_ARTIFACT_NAME/config.log::|;/^configure: warning:/s|^|::warning file=artifacts/$LOGS_ARTIFACT_NAME/config.log::|;/^configure: error:/s|^|::error file=artifacts/$LOGS_ARTIFACT_NAME/config.log::|;" | |
| - name: Copy logs from the Docker image or build container | |
| run: | | |
| mkdir -p "artifacts/$LOGS_ARTIFACT_NAME" | |
| cp -r .tox/$TOX_ENV/Dockerfile .tox/$TOX_ENV/log "artifacts/$LOGS_ARTIFACT_NAME" | |
| if [ -f .tox/$TOX_ENV/Dockertags ]; then CONTAINERS=$(docker create $(tail -1 .tox/$TOX_ENV/Dockertags) /bin/bash || true); fi | |
| if [ -n "$CONTAINERS" ]; then for CONTAINER in $CONTAINERS; do for ARTIFACT in /sage/logs; do docker cp $CONTAINER:$ARTIFACT artifacts/$LOGS_ARTIFACT_NAME && HAVE_LOG=1; done; if [ -n "$HAVE_LOG" ]; then break; fi; done; fi | |
| if: always() | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: artifacts | |
| name: ${{ env.LOGS_ARTIFACT_NAME }} | |
| if: always() | |
| - name: Print out logs for immediate inspection | |
| # and markup the output with GitHub Actions logging commands | |
| run: | | |
| .github/workflows/scan-logs.sh "artifacts/$LOGS_ARTIFACT_NAME" | |
| if: always() | |
| - name: Push Docker images | |
| run: | | |
| if [ -f .tox/$TOX_ENV/Dockertags ]; then | |
| TOKEN="${{ secrets.DOCKER_PKG_GITHUB_TOKEN }}" | |
| if [ -z "$TOKEN" ]; then | |
| TOKEN="${{ secrets.GITHUB_TOKEN }}" | |
| fi | |
| echo "$TOKEN" | docker login docker.pkg.github.com -u ${{ github.actor }} --password-stdin | |
| for a in $(cat .tox/$TOX_ENV/Dockertags); do | |
| FULL_TAG=docker.pkg.github.com/$(echo ${{ github.repository }}|tr 'A-Z' 'a-z')/$a | |
| docker tag $a $FULL_TAG | |
| echo Pushing $FULL_TAG | |
| docker push $FULL_TAG | |
| done || echo "(Ignoring errors)" | |
| fi | |
| if: always() | |
| macos: | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 4 | |
| matrix: | |
| tox_system_factor: [homebrew-macos, conda-forge-macos] | |
| tox_packages_factor: [minimal, standard] | |
| # As of 2021-03, default xcode is 12.4 | |
| # https://github.com/actions/virtual-environments/blob/main/images/macos/macos-10.15-Readme.md#xcode | |
| xcode_version_factor: [default] | |
| os: [ macos-10.15, macos-11.0 ] | |
| include: | |
| # Test xcode 11.7 only on macos-10.15 | |
| - tox_system_factor: homebrew-macos | |
| tox_packages_factor: minimal | |
| xcode_version_factor: 11.7 | |
| os: macos-10.15 | |
| - tox_system_factor: homebrew-macos | |
| tox_packages_factor: standard | |
| xcode_version_factor: 11.7 | |
| os: macos-10.15 | |
| # python3_xcode is only accepted if enough packages are available from the system | |
| # --> to test "minimal", we will need https://trac.sagemath.org/ticket/30949 | |
| - tox_system_factor: homebrew-macos-python3_xcode | |
| tox_packages_factor: standard | |
| xcode_version_factor: 11.7 | |
| os: macos-10.15 | |
| - tox_system_factor: homebrew-macos-python3_xcode | |
| tox_packages_factor: standard | |
| xcode_version_factor: default | |
| os: macos-10.15 | |
| - tox_system_factor: homebrew-macos-python3_xcode | |
| tox_packages_factor: standard | |
| xcode_version_factor: default | |
| os: macos-11.0 | |
| needs: [dist] | |
| env: | |
| TOX_ENV: local-${{ matrix.tox_system_factor }}-${{ matrix.tox_packages_factor }} | |
| LOGS_ARTIFACT_NAME: logs-commit-${{ github.sha }}-tox-local-${{ matrix.tox_system_factor }}-${{ matrix.tox_packages_factor }}-${{ matrix.os }}-xcode_${{ matrix.xcode_version_factor }} | |
| DOCKER_TARGETS: configured with-targets with-targets-optional | |
| steps: | |
| - name: Select Xcode version | |
| run: | | |
| if [ ${{ matrix.xcode_version_factor }} != default ]; then sudo xcode-select -s /Applications/Xcode_${{ matrix.xcode_version_factor }}.app; fi | |
| - name: Check out SageMath | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: ${{ env.SAGE_REPO }} | |
| ref: ${{ env.SAGE_REF }} | |
| fetch-depth: 2000 | |
| if: env.SAGE_REPO != '' | |
| - name: Check out git-trac-command | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: sagemath/git-trac-command | |
| path: git-trac-command | |
| if: env.SAGE_TRAC_GIT != '' | |
| - name: Check out SageMath from trac.sagemath.org | |
| shell: bash {0} | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "ci-sage workflow" | |
| if [ ! -d .git ]; then git init; fi; git remote add trac ${{ env.SAGE_TRAC_GIT }} && x=1 && while [ $x -le 5 ]; do x=$(( $x + 1 )); sleep $(( $RANDOM % 60 + 1 )); if git-trac-command/git-trac fetch $SAGE_TICKET; then git merge FETCH_HEAD || echo "(ignored)"; exit 0; fi; sleep 40; done; exit 1 | |
| if: env.SAGE_TRAC_GIT != '' | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| path: upstream | |
| name: upstream | |
| - name: Update Sage packages from upstream artifact | |
| run: | | |
| (export PATH=$(pwd)/build/bin:$PATH; (cd upstream && bash -x update-pkgs.sh) && git diff) | |
| - name: Install test prerequisites | |
| run: | | |
| brew install tox | |
| - name: Build and test with tox | |
| # We use a high parallelization on purpose in order to catch possible parallelization bugs in the build scripts. | |
| # For doctesting, we use a lower parallelization to avoid timeouts. | |
| run: | | |
| MAKE="make -j12" tox -e $TOX_ENV -- SAGE_NUM_THREADS=4 $TARGETS | |
| - name: Prepare logs artifact | |
| run: | | |
| mkdir -p "artifacts/$LOGS_ARTIFACT_NAME"; cp -r .tox/*/log "artifacts/$LOGS_ARTIFACT_NAME" | |
| if: always() | |
| - uses: actions/upload-artifact@v1 | |
| with: | |
| path: artifacts | |
| name: ${{ env.LOGS_ARTIFACT_NAME }} | |
| if: always() | |
| - name: Print out logs for immediate inspection | |
| # and markup the output with GitHub Actions logging commands | |
| run: | | |
| .github/workflows/scan-logs.sh "artifacts/$LOGS_ARTIFACT_NAME" | |
| if: always() |