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How can I use custom genomes and GFF files for HUMAnN database? #47

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jolespin opened this issue Jul 18, 2023 · 1 comment
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How can I use custom genomes and GFF files for HUMAnN database? #47

jolespin opened this issue Jul 18, 2023 · 1 comment

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@jolespin
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I'd like to use this for a dataset where I have prokaryotic, eukaryotic, and viral genomes with their own gene calls. How can I use this software and existing gene calls to build a HUMAnN database?
@jolespin jolespin changed the title How to use custom gene calls for prokaryotic, eukaryotic, and viral organisms when creating HUMAnN database? How can I use custom genomes and GFF files for HUMAnN database? Jul 18, 2023
@nick-youngblut
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@jolespin unfortunately Struo2 cannot currently be used with Eukaryotic genomes. See some of the other issues (e.g., #11) for more details.

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@nick-youngblut @jolespin