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Finish Hotfix-vignette-links
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julienleroux5 committed Sep 23, 2024
2 parents 777bffe + 071bb76 commit a4fc32d
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2 changes: 1 addition & 1 deletion README.Rmd
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Expand Up @@ -138,7 +138,7 @@ convert_all_samples_data(analysis_id = "e236bf99-31cd-44ae-a4e7-74915697df65", f

This will save the samples data and metadata in the same `file.h5` file.

Other functions are available to only collect the data from the API to an R object, and then to save this R object to a Parquet file (see `vignette("collect-save-functions"))`. CCS values can also be retrieved in addition to bin index and drift time values, see `vignette("get-ccs-values").`
Other functions are available to only collect the data from the API to an R object, and then to save this R object to a Parquet file (see `vignette("collect-save-functions")`). CCS values can also be retrieved in addition to bin index and drift time values, see `vignette("get-ccs-values")`.

Parquet or HDF5 files can be opened easily in `R` with the `arrow` or `rhdf5` packages. Parquet files contain both low and high energy spectra (HDMSe), and HDF5 files contain low energy in the "ms1" dataset, high energy in the "ms2" dataset, and metadata in the "metadata" dataset. The `fromJSON` function from `jsonlite` package will import the metadata json file (associated with the Parquet file) as a list of dataframes.

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4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -139,9 +139,9 @@ This will save the samples data and metadata in the same `file.h5` file.

Other functions are available to only collect the data from the API to
an R object, and then to save this R object to a Parquet file (see
`vignette("collect-save-functions"))`. CCS values can also be retrieved
`vignette("collect-save-functions")`). CCS values can also be retrieved
in addition to bin index and drift time values, see
`vignette("get-ccs-values").`
`vignette("get-ccs-values")`.

Parquet or HDF5 files can be opened easily in `R` with the `arrow` or
`rhdf5` packages. Parquet files contain both low and high energy spectra
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