precision, recall and density of networks based on geneset annotations

leekgroup · Oct 8, 2018 · 4ad211e · 4ad211e
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diff --git a/results/PR/pr_density_glasso_canonical_artery.Rds b/results/PR/pr_density_glasso_canonical_artery.Rds
diff --git a/results/PR/pr_density_glasso_canonical_blood.Rds b/results/PR/pr_density_glasso_canonical_blood.Rds
diff --git a/results/PR/pr_density_glasso_canonical_lung.Rds b/results/PR/pr_density_glasso_canonical_lung.Rds
diff --git a/results/PR/pr_density_glasso_canonical_muscle.Rds b/results/PR/pr_density_glasso_canonical_muscle.Rds
diff --git a/results/PR/pr_density_glasso_canonical_nerve.Rds b/results/PR/pr_density_glasso_canonical_nerve.Rds
diff --git a/results/PR/pr_density_glasso_canonical_skin.Rds b/results/PR/pr_density_glasso_canonical_skin.Rds
diff --git a/results/PR/pr_density_glasso_canonical_subcutaneous.Rds b/results/PR/pr_density_glasso_canonical_subcutaneous.Rds
diff --git a/results/PR/pr_density_glasso_canonical_thyroid.Rds b/results/PR/pr_density_glasso_canonical_thyroid.Rds
diff --git a/results/PR/pr_density_glasso_shared_artery.Rds b/results/PR/pr_density_glasso_shared_artery.Rds
diff --git a/results/PR/pr_density_glasso_shared_blood.Rds b/results/PR/pr_density_glasso_shared_blood.Rds
diff --git a/results/PR/pr_density_glasso_shared_lung.Rds b/results/PR/pr_density_glasso_shared_lung.Rds
diff --git a/results/PR/pr_density_glasso_shared_muscle.Rds b/results/PR/pr_density_glasso_shared_muscle.Rds
diff --git a/results/PR/pr_density_glasso_shared_nerve.Rds b/results/PR/pr_density_glasso_shared_nerve.Rds
diff --git a/results/PR/pr_density_glasso_shared_skin.Rds b/results/PR/pr_density_glasso_shared_skin.Rds
diff --git a/results/PR/pr_density_glasso_shared_subcutaneous.Rds b/results/PR/pr_density_glasso_shared_subcutaneous.Rds
diff --git a/results/PR/pr_density_glasso_shared_thyroid.Rds b/results/PR/pr_density_glasso_shared_thyroid.Rds
diff --git a/results/PR/pr_density_glasso_tft_artery.Rds b/results/PR/pr_density_glasso_tft_artery.Rds
diff --git a/results/PR/pr_density_glasso_tft_lung.Rds b/results/PR/pr_density_glasso_tft_lung.Rds
diff --git a/results/PR/pr_density_glasso_tft_muscle.Rds b/results/PR/pr_density_glasso_tft_muscle.Rds
diff --git a/results/PR/pr_density_glasso_tft_nerve.Rds b/results/PR/pr_density_glasso_tft_nerve.Rds
diff --git a/results/PR/pr_density_glasso_tft_skin.Rds b/results/PR/pr_density_glasso_tft_skin.Rds
diff --git a/results/PR/pr_density_glasso_tft_subcutaneous.Rds b/results/PR/pr_density_glasso_tft_subcutaneous.Rds
diff --git a/results/PR/pr_density_glasso_tft_thyroid.Rds b/results/PR/pr_density_glasso_tft_thyroid.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_artery.Rds b/results/PR/pr_density_power_wgcna_canonical_artery.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_blood.Rds b/results/PR/pr_density_power_wgcna_canonical_blood.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_lung.Rds b/results/PR/pr_density_power_wgcna_canonical_lung.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_muscle.Rds b/results/PR/pr_density_power_wgcna_canonical_muscle.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_nerve.Rds b/results/PR/pr_density_power_wgcna_canonical_nerve.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_skin.Rds b/results/PR/pr_density_power_wgcna_canonical_skin.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_subcutaneous.Rds b/results/PR/pr_density_power_wgcna_canonical_subcutaneous.Rds
diff --git a/results/PR/pr_density_power_wgcna_canonical_thyroid.Rds b/results/PR/pr_density_power_wgcna_canonical_thyroid.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_artery.Rds b/results/PR/pr_density_power_wgcna_tft_artery.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_blood.Rds b/results/PR/pr_density_power_wgcna_tft_blood.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_lung.Rds b/results/PR/pr_density_power_wgcna_tft_lung.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_muscle.Rds b/results/PR/pr_density_power_wgcna_tft_muscle.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_nerve.Rds b/results/PR/pr_density_power_wgcna_tft_nerve.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_skin.Rds b/results/PR/pr_density_power_wgcna_tft_skin.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_subcutaneous.Rds b/results/PR/pr_density_power_wgcna_tft_subcutaneous.Rds
diff --git a/results/PR/pr_density_power_wgcna_tft_thyroid.Rds b/results/PR/pr_density_power_wgcna_tft_thyroid.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_artery.Rds b/results/PR/pr_density_wgcna-signed_canonical_artery.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_blood.Rds b/results/PR/pr_density_wgcna-signed_canonical_blood.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_lung.Rds b/results/PR/pr_density_wgcna-signed_canonical_lung.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_muscle.Rds b/results/PR/pr_density_wgcna-signed_canonical_muscle.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_nerve.Rds b/results/PR/pr_density_wgcna-signed_canonical_nerve.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_skin.Rds b/results/PR/pr_density_wgcna-signed_canonical_skin.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_subcutaneous.Rds b/results/PR/pr_density_wgcna-signed_canonical_subcutaneous.Rds
diff --git a/results/PR/pr_density_wgcna-signed_canonical_thyroid.Rds b/results/PR/pr_density_wgcna-signed_canonical_thyroid.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_artery.Rds b/results/PR/pr_density_wgcna-signed_shared_artery.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_blood.Rds b/results/PR/pr_density_wgcna-signed_shared_blood.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_lung.Rds b/results/PR/pr_density_wgcna-signed_shared_lung.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_muscle.Rds b/results/PR/pr_density_wgcna-signed_shared_muscle.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_nerve.Rds b/results/PR/pr_density_wgcna-signed_shared_nerve.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_skin.Rds b/results/PR/pr_density_wgcna-signed_shared_skin.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_subcutaneous.Rds b/results/PR/pr_density_wgcna-signed_shared_subcutaneous.Rds
diff --git a/results/PR/pr_density_wgcna-signed_shared_thyroid.Rds b/results/PR/pr_density_wgcna-signed_shared_thyroid.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_artery.Rds b/results/PR/pr_density_wgcna-signed_tft_artery.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_blood.Rds b/results/PR/pr_density_wgcna-signed_tft_blood.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_lung.Rds b/results/PR/pr_density_wgcna-signed_tft_lung.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_muscle.Rds b/results/PR/pr_density_wgcna-signed_tft_muscle.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_nerve.Rds b/results/PR/pr_density_wgcna-signed_tft_nerve.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_skin.Rds b/results/PR/pr_density_wgcna-signed_tft_skin.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_subcutaneous.Rds b/results/PR/pr_density_wgcna-signed_tft_subcutaneous.Rds
diff --git a/results/PR/pr_density_wgcna-signed_tft_thyroid.Rds b/results/PR/pr_density_wgcna-signed_tft_thyroid.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_artery.Rds b/results/PR/pr_density_wgcna_canonical_artery.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_blood.Rds b/results/PR/pr_density_wgcna_canonical_blood.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_lung.Rds b/results/PR/pr_density_wgcna_canonical_lung.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_muscle.Rds b/results/PR/pr_density_wgcna_canonical_muscle.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_nerve.Rds b/results/PR/pr_density_wgcna_canonical_nerve.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_skin.Rds b/results/PR/pr_density_wgcna_canonical_skin.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_subcutaneous.Rds b/results/PR/pr_density_wgcna_canonical_subcutaneous.Rds
diff --git a/results/PR/pr_density_wgcna_canonical_thyroid.Rds b/results/PR/pr_density_wgcna_canonical_thyroid.Rds