Initialize notes for every class

R/00-setup.R

@@ -14,3 +14,16 @@ usethis::use_github() ## commit first, then run this command
 
 ## Start 01-intro notes
 usethis::use_r('01-introduction.R')
+
+## More general:
+r_files <- dir('../osca_LIIGH_UNAM_2020/', pattern = '[0-9]+.*\\.R$')
+for(i in seq_along(r_files)) {
+    r_content <- glue::glue('# Notes for {r_files[i]}
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/{r_files[i]}
+
+## Notes
+
+        ')
+    writeLines(r_content, here::here('R', r_files[i]))
+}

R/00-template.R

@@ -0,0 +1,6 @@
+# Notes for 00-template.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/00-template.R
+
+## Notes
+

R/01-introduction.R

@@ -1 +1,6 @@
-## Notes for the introduction
+# Notes for 01-introduction.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/01-introduction.R
+
+## Notes
+

R/02-data-infrastructure-and-import.R

@@ -0,0 +1,6 @@
+# Notes for 02-data-infrastructure-and-import.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/02-data-infrastructure-and-import.R
+
+## Notes
+

R/03-quality-control.R

@@ -0,0 +1,6 @@
+# Notes for 03-quality-control.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/03-quality-control.R
+
+## Notes
+

R/04-normalization.R

@@ -0,0 +1,6 @@
+# Notes for 04-normalization.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/04-normalization.R
+
+## Notes
+

R/05-feature-selection.R

@@ -0,0 +1,6 @@
+# Notes for 05-feature-selection.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/05-feature-selection.R
+
+## Notes
+

R/06-dimensionality-reduction.R

@@ -0,0 +1,6 @@
+# Notes for 06-dimensionality-reduction.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/06-dimensionality-reduction.R
+
+## Notes
+

R/07-clustering.R

@@ -0,0 +1,6 @@
+# Notes for 07-clustering.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/07-clustering.R
+
+## Notes
+

R/08-marker-gene-detection.R

@@ -0,0 +1,6 @@
+# Notes for 08-marker-gene-detection.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/08-marker-gene-detection.R
+
+## Notes
+

R/09-cell-annotation.R

@@ -0,0 +1,6 @@
+# Notes for 09-cell-annotation.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/09-cell-annotation.R
+
+## Notes
+

R/10-data-integration.R

@@ -0,0 +1,6 @@
+# Notes for 10-data-integration.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/10-data-integration.R
+
+## Notes
+

R/11-multi-sample-comparisons.R

@@ -0,0 +1,6 @@
+# Notes for 11-multi-sample-comparisons.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/11-multi-sample-comparisons.R
+
+## Notes
+

R/12-spatial-transcriptomics.R

@@ -0,0 +1,6 @@
+# Notes for 12-spatial-transcriptomics.R
+# --------------------------------------
+## Copy code from https://github.com/lcolladotor/osca_LIIGH_UNAM_2020/blob/master/12-spatial-transcriptomics.R
+
+## Notes
+