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Updated minimap2
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@rvaser
rvaser committed Dec 11, 2018
1 parent d388a2f commit 07364a1
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion vendor/minimap2
Submodule minimap2 updated 39 files
+2 −1 LICENSE.txt
+1 −1 MANIFEST.in
+16 −12 Makefile
+128 −0 NEWS.md
+19 −9 README.md
+158 −33 align.c
+9 −4 bseq.c
+2 −2 chain.c
+2 −2 cookbook.md
+1 −1 example.c
+75 −24 format.c
+0 −216 getopt.c
+0 −53 getopt.h
+26 −18 hit.c
+44 −25 index.c
+116 −0 ketopt.h
+1 −1 ksort.h
+2 −2 ksw2.h
+14 −15 ksw2_dispatch.c
+5 −5 ksw2_extd2_sse.c
+2 −2 ksw2_exts2_sse.c
+5 −5 ksw2_extz2_sse.c
+166 −143 main.c
+215 −58 map.c
+57 −0 minimap.h
+36 −3 minimap2.1
+21 −2 misc.c
+488 −12 misc/paftools.js
+13 −3 mmpriv.h
+23 −2 options.c
+5 −5 pe.c
+26 −6 python/README.rst
+23 −4 python/cmappy.h
+7 −0 python/cmappy.pxd
+63 −18 python/mappy.pyx
+8 −4 python/minimap2.py
+10 −9 sdust.c
+17 −7 setup.py
+80 −0 splitidx.c

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